BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0471.p         (133 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...   126   1e-29
PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...    92   2e-19
RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...    88   4e-18
RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...    67   1e-11
PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...    65   3e-11

>RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 508

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 81/105 (77%)

Query: 11  ARASYEEQVASYRGTVLNAFREVEDNLANLRILDQQNRAQDEAVAASARAAKLSHTQYRE 70
           ARA+YEE VA+YR  VL AFREVEDNL++LR+L  Q++ QD+AV AS RAA+LS T+Y  
Sbjct: 392 ARAAYEENVANYREAVLVAFREVEDNLSDLRLLADQSKVQDDAVRASTRAAQLSRTRYNA 451

Query: 71  GAVSYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGWG 115
           G+V+Y  VIDA+R +L  QR +V L G R  +TV L++ALGGGWG
Sbjct: 452 GSVNYLDVIDAERNMLSTQRVAVQLAGGRVNATVGLVKALGGGWG 496


>PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 498

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%)

Query: 11  ARASYEEQVASYRGTVLNAFREVEDNLANLRILDQQNRAQDEAVAASARAAKLSHTQYRE 70
           A A+Y++ VA+YR TVL+ FREVED L  L +LD+++  Q EA+ ++  A +L+  QY+ 
Sbjct: 372 AEATYDQTVATYRQTVLDGFREVEDYLVQLSVLDEESGVQREALESAREALRLAENQYKA 431

Query: 71  GAVSYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 114
           G V Y  V+    T L  +R  +TL G R  ++V LI A+GGGW
Sbjct: 432 GTVDYTDVVTNQATALSNERTVLTLLGSRLTASVQLIAAMGGGW 475


>RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 508

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 67/104 (64%)

Query: 11  ARASYEEQVASYRGTVLNAFREVEDNLANLRILDQQNRAQDEAVAASARAAKLSHTQYRE 70
           A A+Y+  V +YR TVL AF++VEDNLA LR   Q+   Q++AV ++  AA+L   +YR 
Sbjct: 383 AGAAYDAAVGTYRQTVLGAFQDVEDNLAALRWQAQEFDVQNDAVQSAQEAAQLDLNRYRA 442

Query: 71  GAVSYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 114
           G +S+  VI A  T    +R  +TL G+R  + V L++ALGGGW
Sbjct: 443 GTISFLEVITAQATAYTAERTLLTLQGKRYSAAVLLVKALGGGW 486


>RSc1294 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 489

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 59/102 (57%)

Query: 13  ASYEEQVASYRGTVLNAFREVEDNLANLRILDQQNRAQDEAVAASARAAKLSHTQYREGA 72
           A Y+  VASY  T+  A  +  D + +L  +D Q   Q  A+A + RA  L+ T+Y  G 
Sbjct: 362 AGYDAAVASYNQTLTEALHDTADQITSLHSIDTQIDIQRTALAEAERAYSLARTRYGAGL 421

Query: 73  VSYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 114
            +  +V++A+ TVLQQ+R +  L   R  + + LI+ALGGG+
Sbjct: 422 GTQLTVLNAESTVLQQRRLAALLQARRLDAQMALIKALGGGY 463


>PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 479

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%)

Query: 13  ASYEEQVASYRGTVLNAFREVEDNLANLRILDQQNRAQDEAVAASARAAKLSHTQYREGA 72
           A  +E    Y+ TVL A++EV+D + +     ++     EAVA + RA + +  QYR GA
Sbjct: 369 AQQQEAAIDYQRTVLRAWQEVDDAMHDYAANQRRQERLGEAVAQNRRALQSAREQYRAGA 428

Query: 73  VSYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 114
           V + SV+D+ R +L  Q   V  D   + + VNL +ALGGGW
Sbjct: 429 VDFLSVLDSQRQLLDNQEQQVASDEAVSLTLVNLYKALGGGW 470