BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0470.p         (211 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...   181   8e-46
PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug...    92   8e-19
RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...    77   2e-14
RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...    77   3e-14
RSc0166 [MU] COG1538 Outer membrane protein Rso Ralstonia solana...    75   1e-13

>RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 508

 Score =  181 bits (460), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 129/186 (69%), Gaps = 10/186 (5%)

Query: 1   LTRDARSGYFPQVDAGVGATRQRPSPASQGLPADADTRPNTLYRAQVNVSYEVDLFGRVA 60
           + +  R+  FP++DAG G TRQR S AS GLP  A  +P T +RAQ  VSYE DLFGRV 
Sbjct: 116 IVQSNRAALFPELDAGFGPTRQRASAASAGLPVGAPVQPQTYWRAQTTVSYEADLFGRVR 175

Query: 61  STVDAATADAQRSEALFHSVLLALQADVAQQYFLVRELDAAAALYRGTVDLRQESLRLVQ 120
           ++V+AA ADA+R EAL+ +  L+LQADVAQ YF +R LDA  AL   TV  R+E+L+LVQ
Sbjct: 176 NSVNAADADAERVEALYRAARLSLQADVAQTYFSLRTLDAEEALLARTVVGREEALKLVQ 235

Query: 121 RRFDEGDISEVDVARARAELASAQSEALGIARQRATAEHALAILLGRT----------MA 170
           RRF  GDI E+DVARA AELA+A+S+ L +AR+RA  EHALA LLG+           + 
Sbjct: 236 RRFSTGDIGELDVARADAELATARSDRLDVARRRALLEHALATLLGKAPSGFTLGADPLQ 295

Query: 171 AANARV 176
           AAN RV
Sbjct: 296 AANVRV 301


>PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa
          Length = 498

 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 8/181 (4%)

Query: 1   LTRDARSGYFPQVDAGVGATR--QRPSPASQGLPADADTRP------NTLYRAQVNVSYE 52
           L R AR+ +FP +   VG TR  Q    ++  LP  +          +T Y   ++VS+E
Sbjct: 92  LVRGARAAFFPSITGNVGKTRSGQGGGDSTVLLPGGSTVSSGGSGAISTSYSTNLSVSWE 151

Query: 53  VDLFGRVASTVDAATADAQRSEALFHSVLLALQADVAQQYFLVRELDAAAALYRGTVDLR 112
           VDL+G++   ++A  A    S A   +V L+ Q+ +AQ Y  +R +D    L   TV   
Sbjct: 152 VDLWGKLRRQLEANQASLHASAADLAAVRLSQQSQLAQNYLQLRVMDEQIRLLNDTVTAY 211

Query: 113 QESLRLVQRRFDEGDISEVDVARARAELASAQSEALGIARQRATAEHALAILLGRTMAAA 172
           + SL++ + ++  G ++  DVA+AR +L S Q++A+ +  QRA  EHA+A+L+G   A  
Sbjct: 212 ERSLKVAENKYRAGIVTRADVAQARTQLKSTQAQAIDLKYQRAQLEHAIAVLVGLPPAQF 271

Query: 173 N 173
           N
Sbjct: 272 N 272


>RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 483

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 6/170 (3%)

Query: 1   LTRDARSGYFPQVDAGVGATRQRPSP----ASQGLPADADTRPNTLYRAQVNVSYEVDLF 56
           LTR AR+G  PQV A     R R S     +S   P  +  + + + RA  +VSYE DLF
Sbjct: 95  LTRVARAGLLPQVTASTSGARLRTSADRPLSSYSSPTMSTVQNDFVVRA--DVSYEADLF 152

Query: 57  GRVASTVDAATADAQRSEALFHSVLLALQADVAQQYFLVRELDAAAALYRGTVDLRQESL 116
           GRV   +  A A  +++ A   +V L L A VA  ++ +RE DA   + +  + L++++L
Sbjct: 153 GRVRGNIANAAASEEQAAANLENVRLLLAAQVATTWYSLRETDAEIDVVQQGLALQRKAL 212

Query: 117 RLVQRRFDEGDISEVDVARARAELASAQSEALGIARQRATAEHALAILLG 166
             V  R  +G  S +D+A+ +A + S  ++A  + +QR   EHALA L+G
Sbjct: 213 DFVASRHQDGVASGLDLAQQQALVDSTATQAELLQKQRTQYEHALATLIG 262


>RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 508

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 13/179 (7%)

Query: 1   LTRDARSGYFPQVDAG--------VGATRQRPSPASQGLPADADTRPNTLYRAQVNVSYE 52
           L + AR+ +FP + A         V  T       S G P+  +T+  TL     + S+E
Sbjct: 103 LVQSARAQFFPTISASASASRSRSVRTTTNADGSLSTGSPSITNTQSLTL-----DASWE 157

Query: 53  VDLFGRVASTVDAATADAQRSEALFHSVLLALQADVAQQYFLVRELDAAAALYRGTVDLR 112
           +DL+GR+  TV++  A A+ S     S LL+ QA +AQ YF +R  D   A+ R TV   
Sbjct: 158 LDLWGRIRRTVESNKASAEASAGDLASALLSAQATLAQDYFQLRVTDTQKAVLRRTVADY 217

Query: 113 QESLRLVQRRFDEGDISEVDVARARAELASAQSEALGIARQRATAEHALAILLGRTMAA 171
           +  L+L Q ++  G     DV  A+ +L   Q+  L     RA  EHA+A+L+G++ +A
Sbjct: 218 ERFLQLTQNQYAVGVAQRSDVLTAQTQLKQTQALLLDAEVTRAQLEHAIAVLIGKSPSA 276


>RSc0166 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum
          Length = 480

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 6/167 (3%)

Query: 4   DARSG-YFPQVDAGVGATRQRPSPASQGLPADADTRPNTLYRAQVNVSYEVDLFGRVAST 62
           DA+ G   P VD    A RQ+ +P + G        P TLY A ++VSY +DLFG V   
Sbjct: 106 DAQFGAVLPSVDGSASAVRQQVNPEAFGFNTP-KPGPFTLYSASLSVSYALDLFGGVRRA 164

Query: 63  VDAATA--DAQRSEALFHSVLLALQADVAQQYFLVRELDAAAALYRGTVDLRQESLRLVQ 120
           ++A+ A  D QR E    +  L+L  +V      +  LDA  A  +  +  +++ L + +
Sbjct: 165 LEASRAQVDMQRYE--LEAARLSLAGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITE 222

Query: 121 RRFDEGDISEVDVARARAELASAQSEALGIARQRATAEHALAILLGR 167
           RRF  G ++ VDV   R ++A  ++    +A+Q A A H L++LLGR
Sbjct: 223 RRFGAGGVARVDVLSQRTQVAQTEATLPPLAQQAAQARHRLSVLLGR 269