BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0431.p (337 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 377 e-104 PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 318 1e-86 PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 303 3e-82 mlr1983 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 293 3e-79 AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 292 9e-79 >RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 315 Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/298 (59%), Positives = 225/298 (75%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 MDR QAMQVFT VV+A+SFT+AADNL LPR TVT LVQ LE+ L VRLL+RTTRR+++T Sbjct: 1 MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60 Query: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 DGAAYYERCVRIL DL+ETE +F G +G LRIDVP S+G+ +L+P + DF+ YP Sbjct: 61 DGAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPG 120 Query: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 ++L +GM DR VDLVQE VDC +R+GELQDS++VARRIG V CA+P YLER+G P + Sbjct: 121 LQLEIGMSDRTVDLVQEGVDCAVRVGELQDSTLVARRIGQLSMVNCASPDYLERYGTPRS 180 Query: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 +EDLQ H AV+YFS R GR +DWDFV++G + K+ ++VN+A++ + CAL G G++Q Sbjct: 181 LEDLQDHIAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCP 298 + H+ G+LVEVL + P+P+SV+Y HNRHLSPKVR FVDWVA LFA P Sbjct: 241 TARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWVAMLFADHP 298 >PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 303 Score = 318 bits (814), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 150/295 (50%), Positives = 203/295 (68%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 MDRFQAMQ FT +V+ +F +AAD+L LPR +VT +Q LE+ L V+LL RTTR++SLT Sbjct: 1 MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60 Query: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 DG AYYERCVR+LADL+E E F V P+GRLR+D+P ++GR+ ++P L +F RYP+ Sbjct: 61 DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120 Query: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 +EL + DR VDL++E DCV+R+GEL DSS+V R + VTCA+ AYLERHG P Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGELHDSSLVGRHLADLPQVTCASAAYLERHGHPRQ 180 Query: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 + +L H AV+Y S +GRT D++F V+G R + M +++VN ADAYV G G++Q Sbjct: 181 LAELGGHLAVNYQSPSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFA 295 AP Y V + +G L +VL +W P + + VY R LSP+VR FVDW+ ELF Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLALHAVYPSQRQLSPRVRVFVDWLVELFG 295 >PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 303 bits (777), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 143/294 (48%), Positives = 199/294 (67%), Gaps = 1/294 (0%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 MDR +M+VF V + SFT+AAD L++PR TV+ VQ LE+ L RLL+RTTR++ LT Sbjct: 1 MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTH 60 Query: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 DG+ ERC +L D++E E F + +R GRL++DVP+ V RL++ P L +F+ ++PD Sbjct: 61 DGSVVLERCRHLLEDMEELESLFHDGSRA-SGRLKVDVPSRVARLLIAPALPEFFRQHPD 119 Query: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 IEL +G DR VDLVQE VDCV+R+G+L +SS+VARR+G Q + CA+PAYLE HG P T Sbjct: 120 IELELGSSDRSVDLVQEGVDCVLRVGQLGNSSLVARRLGEMQLINCASPAYLEEHGEPRT 179 Query: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 DL +H AV+Y S +GR + W++ +G T + ++ VN A++Y+ C L G G++Q Sbjct: 180 PADLDRHWAVNYASPSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQ 239 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELF 294 P Y V H+ G L EVL QW+ MP +Y H RHLS +VRAFVDW+ +L Sbjct: 240 IPAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLL 293 >mlr1983 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 297 Score = 293 bits (751), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 141/299 (47%), Positives = 197/299 (65%), Gaps = 2/299 (0%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 MDR M++F V++ SFT AA +L LPR+T T ++ LE L RLL RTTR+++ T Sbjct: 1 MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQ 60 Query: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 DG AYY RC+ ILA++++ E +FRN P G LRID + R LLP L +F RY Sbjct: 61 DGEAYYRRCLPILAEIEDAEAAFRNAE--PFGLLRIDASTLLTRTFLLPRLPEFLARYSR 118 Query: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 I+L +G DR VDLV+E VDCVIR+GE DS M+ RR+G + +TCA+PAYL RHG P + Sbjct: 119 IDLQIGQSDRLVDLVREGVDCVIRVGEPPDSGMIMRRLGMIREMTCASPAYLSRHGTPAS 178 Query: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 + L H+AV + SSRTG + ++F V G TRE+++ G++A N +D + A G G++Q Sbjct: 179 PDALDGHQAVGFVSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLGLIQ 238 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPL 299 AP Y + + +G LVEVL+ + P+P P+S +Y NR LSP++R F+DW A +FA L Sbjct: 239 APRYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEANL 297 >AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 292 bits (747), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 132/294 (44%), Positives = 196/294 (66%) Query: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 +DR ++FT VVD SFTRAAD L +PR++V+ VQ LE + RLLNRTTR++S T Sbjct: 47 LDRIDLFRIFTRVVDCASFTRAADTLGIPRSSVSAAVQELEGRVGARLLNRTTRKVSPTE 106 Query: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 DG+A+YERC R++AD+++TE FR P GRLRIDVP +GRL++ P L F YP Sbjct: 107 DGSAFYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFLDLYPQ 166 Query: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 I++ +G+ DR VDLV++ +DCV+R+G L DS ++AR IG + + A+PAYL ++G P T Sbjct: 167 IDISLGVTDRAVDLVEDNIDCVLRVGPLSDSGLIARPIGKLRLINVASPAYLAQYGAPKT 226 Query: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 DL +H AV+Y S +GR +W+++ V M ++ VN A+AY+ C L G G++Q Sbjct: 227 PHDLSRHWAVNYASPSSGRVENWEWIENDALHSVPMRSRVTVNNAEAYIACCLAGLGLIQ 286 Query: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELF 294 P Y V H++ G L+EV+ + PMP++++Y H +HLS +++ F +W+ L Sbjct: 287 IPAYDVRLHLESGELIEVMPGHRAEPMPMTLLYSHRQHLSRRLQVFAEWLEALL 340