BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0426.p         (72 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20121 [K] COG3609 Predicted transcriptional regulators contai...    92   4e-19

>SMb20121 [K] COG3609 Predicted transcriptional regulators containing the
          CopG/Arc/MetJ DNA-binding domain Sme Sinorhizobium
          meliloti
          Length = 91

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 58/71 (81%)

Query: 1  VVKSKVRSGEYASESEVIRDGLRTLLARDRAVENWLSNQVAPAYDALKADPSRAVTVDEV 60
          +VK+KV SGEYASESEVIRDGLR L ARD+A+E+WL  +   AYD LKA+PSRA++VD+V
Sbjct: 18 MVKTKVSSGEYASESEVIRDGLRALQARDKALESWLRTEGVSAYDKLKANPSRALSVDQV 77

Query: 61 RARLAAEHAKT 71
          R  LA++  ++
Sbjct: 78 RQHLASKRKRS 88