BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0385.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PM1031 [J] COG0361 Translation initiation factor 1 (IF-1) Pmu Pa...   105   2e-23
HI0548 [J] COG0361 Translation initiation factor 1 (IF-1) Hin Ha...   103   7e-23
infA [J] COG0361 Translation initiation factor 1 (IF-1) Eco Esch...   102   2e-22
ZinfA [J] COG0361 Translation initiation factor 1 (IF-1) EcZ Esc...   102   2e-22
STM0953 [J] COG0361 Translation initiation factor 1 (IF-1) Sty S...   102   2e-22

>PM1031 [J] COG0361 Translation initiation factor 1 (IF-1) Pmu
          Pasteurella multocida
          Length = 72

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 60/70 (85%)

Query: 9  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 68
          MAKE+ IEMQG + E LP++ FRV L+NGH + A+ +G+M+KN+I+IL GDKVT+E++PY
Sbjct: 1  MAKEDCIEMQGTILETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTIEMTPY 60

Query: 69 DLNKGRIIFR 78
          DLNKGRIIFR
Sbjct: 61 DLNKGRIIFR 70


>HI0548 [J] COG0361 Translation initiation factor 1 (IF-1) Hin
          Haemophilus influenzae
          Length = 84

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 62/73 (84%)

Query: 6  KEKMAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLEL 65
          ++ MAKE+ IEMQG + E LP++ FRV L+NGH + A+ +G+M+KN+I+IL GDKVT+E+
Sbjct: 10 EDTMAKEDCIEMQGTILETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEM 69

Query: 66 SPYDLNKGRIIFR 78
          +PYDL+KGRIIFR
Sbjct: 70 TPYDLSKGRIIFR 82


>infA [J] COG0361 Translation initiation factor 1 (IF-1) Eco
          Escherichia coli K12
          Length = 72

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 60/70 (85%)

Query: 9  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 68
          MAKE+ IEMQG V E LP++ FRV L+NGH + A+ +G+M+KN+I+IL GDKVT+EL+PY
Sbjct: 1  MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY 60

Query: 69 DLNKGRIIFR 78
          DL+KGRI+FR
Sbjct: 61 DLSKGRIVFR 70


>ZinfA [J] COG0361 Translation initiation factor 1 (IF-1) EcZ
          Escherichia coli O157:H7 EDL933
          Length = 72

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 60/70 (85%)

Query: 9  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 68
          MAKE+ IEMQG V E LP++ FRV L+NGH + A+ +G+M+KN+I+IL GDKVT+EL+PY
Sbjct: 1  MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY 60

Query: 69 DLNKGRIIFR 78
          DL+KGRI+FR
Sbjct: 61 DLSKGRIVFR 70


>STM0953 [J] COG0361 Translation initiation factor 1 (IF-1) Sty Salmonella
          typhimurium LT2
          Length = 72

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 60/70 (85%)

Query: 9  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 68
          MAKE+ IEMQG V E LP++ FRV L+NGH + A+ +G+M+KN+I+IL GDKVT+EL+PY
Sbjct: 1  MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY 60

Query: 69 DLNKGRIIFR 78
          DL+KGRI+FR
Sbjct: 61 DLSKGRIVFR 70