BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0373.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT460 [B] COG5531 SWIB-domain-containing proteins implicated in ...   107   1e-23
CPn0577 Non COG                                                        92   5e-19
YMR233w [B] COG5531 SWIB-domain-containing proteins implicated i...    77   3e-14
CT643_3 [B] COG5531 SWIB-domain-containing proteins implicated i...    74   2e-13
YOR295w [B] COG5531 SWIB-domain-containing proteins implicated i...    71   1e-12

>CT460 [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Ctr Chlamydia trachomatis
          Length = 86

 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 62/79 (78%)

Query: 96  NAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKNKLQNAENKRNIDADDKLKAIF 155
           N+AFM+P+  SA L  +VGA P+PRTE+ KK+W+YIKKN LQ+  NKRNI+ DDKL  +F
Sbjct: 6   NSAFMQPVNVSADLAAIVGAGPMPRTEIIKKMWDYIKKNGLQDPTNKRNINPDDKLAKVF 65

Query: 156 GGKKQVTMFEMTKLISAHL 174
           G +K + MF+MTK++S H+
Sbjct: 66  GTEKPIDMFQMTKMVSQHI 84


>CPn0577 Non COG
          Length = 87

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query: 91  AKRTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKNKLQNAENKRNIDADDK 150
           +++  N+AFM P+  S  L  +VG  P+PRTE+ KKVWEYIKK+  Q+ +NKRNI  D  
Sbjct: 2   SQKNKNSAFMHPVNISTDLAVIVGKGPMPRTEIVKKVWEYIKKHNCQDQKNKRNILPDAN 61

Query: 151 LKAIFGGKKQVTMFEMTKLISAHL 174
           L  +FG    + MF+MTK +S H+
Sbjct: 62  LAKVFGSSDPIDMFQMTKALSKHI 85


>YMR233w [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Sce Saccharomyces cerevisiae
          Length = 226

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 57/79 (72%), Gaps = 2/79 (2%)

Query: 96  NAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKNKLQNAENKRNIDADDKLKAIF 155
           N+  ++ +  SA L + +G++ LPRT+V K +W+YIK++ LQN +++R I  D+K++ IF
Sbjct: 117 NSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF 176

Query: 156 GGKKQVTMFEMTKLISAHL 174
           G  K++TMF M KL++ HL
Sbjct: 177 G--KKMTMFSMNKLLTKHL 193


>CT643_3 [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Ctr Chlamydia trachomatis
          Length = 122

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 101 KPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKNKLQNAENKRNIDADDKLKAIFGGKKQ 160
           K  TPSAAL  V+GA P+ R E TKK+WEYIK+  LQ+ +NK+ I  D KL+ + G    
Sbjct: 46  KAYTPSAALAAVIGADPVGRPEATKKLWEYIKEKGLQSPQNKKIIIPDSKLQGVIGA-DP 104

Query: 161 VTMFEMTKLISAHL 174
           + MF ++K +SAHL
Sbjct: 105 IDMFALSKKLSAHL 118


>YOR295w [B] COG5531 SWIB-domain-containing proteins implicated in chromatin
           remodeling Sce Saccharomyces cerevisiae
          Length = 228

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 101 KPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKNKLQNAENKRNIDADDKLKAIFGGKKQ 160
           + +T S +L  ++G   L RTEV +++W YIK + LQN  NK+ I  D+KL+ I G  K 
Sbjct: 122 RKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KS 179

Query: 161 VTMFEMTKLISAHLS 175
             MFEM K++++H++
Sbjct: 180 TNMFEMHKILASHMT 194