BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0365.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2805 [F] COG0209 Ribonucleotide reductase, alpha subunit Rso ...   167   4e-42
PA1156 [F] COG0209 Ribonucleotide reductase, alpha subunit Pae P...   114   6e-26
CT827 [F] COG0209 Ribonucleotide reductase, alpha subunit Ctr Ch...    60   1e-09

>RSc2805 [F] COG0209 Ribonucleotide reductase, alpha subunit Rso Ralstonia
           solanacearum
          Length = 987

 Score =  167 bits (424), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 1/104 (0%)

Query: 25  AESQAVASQTAGLGEYRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMVE 84
           AE  AVAS  AG  +Y+IIRRNGAVVGFEPSKI++A+TKAFLAVNGGQGAASARVRE+VE
Sbjct: 22  AEGTAVAS-GAGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVE 80

Query: 85  QLTTNVVSALVRRQPTGGTFHIEDIQDQVELALMRSGEHDVARA 128
            LT NVV AL+R +P GGTFHIED+QDQVELALMRSGEHDVARA
Sbjct: 81  GLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARA 124


>PA1156 [F] COG0209 Ribonucleotide reductase, alpha subunit Pae Pseudomonas
           aeruginosa
          Length = 963

 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 38  GEYRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVRR 97
           G+ R+I+RNG VV +   KI++A+TKAFLAV GG  AAS+R+ + V +LT  V +   RR
Sbjct: 30  GQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVRRLTEQVTATFKRR 89

Query: 98  QPTGGTFHIEDIQDQVELALMRSGEHDVAR 127
            P+GGT HIE+IQDQVELALMR+GE  VAR
Sbjct: 90  MPSGGTIHIEEIQDQVELALMRAGEQKVAR 119


>CT827 [F] COG0209 Ribonucleotide reductase, alpha subunit Ctr Chlamydia
           trachomatis
          Length = 1047

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 42  IIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVRRQPTG 101
           ++RR G VV F P KIS A+ KAF A +  +G   + VRE +  LT N+V+ +    P  
Sbjct: 120 VVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEECCPQQ 179

Query: 102 G-TFHIEDIQDQVELALMRSGEHDVAR 127
                IE IQD VE  LM  G + VA+
Sbjct: 180 DRRIDIEKIQDIVEQQLMVVGHYAVAK 206