BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0350.p         (345 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2511 [K] COG2207 AraC-type DNA-binding domain-containing prote...    94   4e-19
RSc1832 [K] COG2207 AraC-type DNA-binding domain-containing prot...    94   5e-19
ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing protei...    72   1e-12
ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing prot...    72   1e-12
eutR [K] COG2207 AraC-type DNA-binding domain-containing protein...    72   2e-12

>PA2511 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae
           Pseudomonas aeruginosa
          Length = 333

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 120/269 (44%), Gaps = 20/269 (7%)

Query: 80  VMLSIPEA---EGYSLYIPRSGELHWRAAEGLIHCRSGSAIMLDLAR--------MQQLA 128
           V +++ +A     YSL +P SGE           CR G  ++ D+ R         Q+L+
Sbjct: 69  VTITVEDAAAFNAYSLSLPLSGEQEL--------CRGGLRLLSDVRRGVIIAPNERQELS 120

Query: 129 SLGSSSGTGFFFSMHCMTHNLSQLLEAPVHRQLRFQSPLVHDAHVLAPLASLGELIAEGL 188
             G             M   L ++L+ P+   LRF   +       A        I+E +
Sbjct: 121 IAGDCRKLQVVIGRTAMRKVLEEMLQRPIDTPLRFDPEMDALDGASASWWRTVRHISEEM 180

Query: 189 GGSAPLKNAPLAMANLLQAASYLILHNLPHNHSHALTRRPPAPAPRQIKRAVEFIMARLS 248
             S     A  + ++L +A    ++   P+N+S AL +      P  + RA EF+ A   
Sbjct: 181 ARSELYAQAFFS-SDLERALIKGLILAQPNNYSEALQQGLGGRPPHYLLRAREFLQANAR 239

Query: 249 APITLADIAAHAAISVRSLQSGFRRYKEMTPMEFLRTQRLGRVREDLLDPAVPADIQHIA 308
             ++L D+   A +S   L  GFRRY  ++PM +L+  RL  VRE++L       I  IA
Sbjct: 240 ETLSLEDVERAAGVSRFKLFEGFRRYFGVSPMSYLKHYRLAAVREEILASGGARSISTIA 299

Query: 309 LSWGFTHLYLFMRYYKKQFGESPQATLAR 337
           L WGF+HL  F   Y+K+F E+P  T  R
Sbjct: 300 LGWGFSHLGRFSVDYRKRFEETPSMTQRR 328


>RSc1832 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso
           Ralstonia solanacearum
          Length = 342

 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 194 LKNAPLAMANLLQAASYLILHNLPHNHSHALTRRPPAPAPRQIKRAVEFIMARLSAPITL 253
           L    L +A + Q A+ ++L +  HN+S A   R     PR ++RA +++ A    P+  
Sbjct: 199 LAQHKLVIAQIEQLAASVLLASHQHNYSEAAPSRRGTILPRHVRRAQDYLQAHAHEPVCA 258

Query: 254 ADIAAHAAISVRSLQSGFRRYKEMTPMEFLRTQRLGRVREDLLDPAVPADIQHIALSWGF 313
             +A    +SVRSL +GF+ +  ++PM +LR  R+ R R +L+      ++  +AL WGF
Sbjct: 259 DQLAQVVGVSVRSLYTGFKEFLGVSPMHYLRDLRMERTRTELMS-GEATNVAGVALRWGF 317

Query: 314 THLYLFMRYYKKQFGESPQATLARR 338
            H+  F   YK+++GE+P  TL RR
Sbjct: 318 AHMGRFSNDYKQRYGETPSQTLRRR 342


>ZyfeG [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ
           Escherichia coli O157:H7 EDL933
          Length = 350

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 234 RQIKRAVEFIMARLSAPITLADIAAHAAISVRSLQSGFRRYKEMTPMEFLRTQRLGRVRE 293
           R + RA E+++  +S P+T+ D+     +S R+LQ+ F     + P  +L+  RL  VR 
Sbjct: 240 RLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRR 299

Query: 294 DLLDP-AVPADIQHIALSWGFTHLYLFMRYYKKQFGESPQATLARRTVEW 342
           +L+ P +    ++  A+ WGF HL  F   Y++ F E P  TL +R  EW
Sbjct: 300 ELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMREW 349


>ECs3308 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ecs
           Escherichia coli O157:H7
          Length = 350

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 234 RQIKRAVEFIMARLSAPITLADIAAHAAISVRSLQSGFRRYKEMTPMEFLRTQRLGRVRE 293
           R + RA E+++  +S P+T+ D+     +S R+LQ+ F     + P  +L+  RL  VR 
Sbjct: 240 RLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRR 299

Query: 294 DLLDP-AVPADIQHIALSWGFTHLYLFMRYYKKQFGESPQATLARRTVEW 342
           +L+ P +    ++  A+ WGF HL  F   Y++ F E P  TL +R  EW
Sbjct: 300 ELISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMREW 349


>eutR [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco
           Escherichia coli K12
          Length = 350

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 234 RQIKRAVEFIMARLSAPITLADIAAHAAISVRSLQSGFRRYKEMTPMEFLRTQRLGRVRE 293
           R + RA E+++  +S P+T+ D+     +S R+LQ+ F     + P  +L+  RL  VR 
Sbjct: 240 RLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRR 299

Query: 294 DLLDP-AVPADIQHIALSWGFTHLYLFMRYYKKQFGESPQATLARRTVEW 342
           +L+ P +    ++  A+ WGF HL  F   Y++ F E P  TL +R  EW
Sbjct: 300 ELISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTLHQRMREW 349