BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0320.p (186 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0503 [L] COG0817 Holliday junction resolvasome, endonuclease ... 235 4e-62 NMA1631 [L] COG0817 Holliday junction resolvasome, endonuclease ... 162 5e-40 NMB1419 [L] COG0817 Holliday junction resolvasome, endonuclease ... 162 5e-40 VC1847 [L] COG0817 Holliday junction resolvasome, endonuclease s... 157 2e-38 YPO2056 [L] COG0817 Holliday junction resolvasome, endonuclease ... 149 2e-36 >RSc0503 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Rso Ralstonia solanacearum Length = 181 Score = 235 bits (600), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 121/187 (64%), Positives = 143/187 (76%), Gaps = 7/187 (3%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTP-DGDLPSRLKVILASVGEVVKSYT 59 M+ILGIDPGLRTTGFGV+ + G+ L Y+ASGTIK+ + DLPSRLK + V E+V++Y Sbjct: 1 MRILGIDPGLRTTGFGVLERHGHQLVYVASGTIKSDGNADLPSRLKTLYDGVSELVRTYR 60 Query: 60 PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119 PDCA+IEKVFVNVNP STLLLGQARGA IC L++ +L V EYTALQ+KQAV G+GRA K Sbjct: 61 PDCASIEKVFVNVNPQSTLLLGQARGAVICGLMSGNLPVFEYTALQLKQAVVGYGRANKD 120 Query: 120 QVQEMVARLLKLPGLPXGAGNGGAAAQAARGVAICHAHGGGVLSDLGALAPALARKGIRM 179 QVQ+MV RLL L G P G A A GVAICHAHGG L+ + LAP LARKG+R+ Sbjct: 121 QVQDMVVRLLNLEGRP------GTDAADALGVAICHAHGGETLAAMAGLAPQLARKGLRV 174 Query: 180 RGGRLVG 186 R GRLVG Sbjct: 175 RRGRLVG 181 >NMA1631 [L] COG0817 Holliday junction resolvasome, endonuclease subunit NmA Neisseria meningitidis Z2491 Length = 180 Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 120/185 (64%), Gaps = 13/185 (7%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTP-DGDLPSRLKVILASVGEVVKSYT 59 ++ILGIDPG R TGFGVI +G Y+ASG IKTP D L R+ VI+ +GEVV Y Sbjct: 7 VRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVVTVYK 66 Query: 60 PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119 P AA+E+VFVNVNP STL+LGQARGAA+ ALV+ L V+EYTALQVKQAV G G+A K Sbjct: 67 PQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGKAAKE 126 Query: 120 QVQEMVARLLKLPGLPXGAGNGGAAAQAARGVAICHAHGGGVLSDLGALAPALARKGIRM 179 QVQ MV ++L L G P G A VA+ HA L + G LA L G+++ Sbjct: 127 QVQHMVVQMLGLSGTPQPDAADGLA------VALTHA-----LRNHG-LAAKLNPSGMQV 174 Query: 180 RGGRL 184 + GR Sbjct: 175 KRGRF 179 >NMB1419 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Nme Neisseria meningitidis MC58 Length = 178 Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 120/185 (64%), Gaps = 13/185 (7%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTP-DGDLPSRLKVILASVGEVVKSYT 59 ++ILGIDPG R TGFGVI +G Y+ASG IKTP D L R+ VI+ +GEVV Y Sbjct: 5 VRILGIDPGSRVTGFGVIDVRGRDHFYVASGCIKTPADAPLADRIAVIVRHIGEVVTVYK 64 Query: 60 PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119 P AA+E+VFVNVNP STL+LGQARGAA+ ALV+ L V+EYTALQVKQAV G G+A K Sbjct: 65 PQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLPVSEYTALQVKQAVVGKGKAAKE 124 Query: 120 QVQEMVARLLKLPGLPXGAGNGGAAAQAARGVAICHAHGGGVLSDLGALAPALARKGIRM 179 QVQ MV ++L L G P G A VA+ HA L + G LA L G+++ Sbjct: 125 QVQHMVVQMLGLSGTPQPDAADGLA------VALTHA-----LRNHG-LAAKLNPSGMQV 172 Query: 180 RGGRL 184 + GR Sbjct: 173 KRGRF 177 >VC1847 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Vch Vibrio cholerae Length = 173 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/174 (52%), Positives = 111/174 (63%), Gaps = 7/174 (4%) Query: 3 ILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTPDC 62 ILGIDPG R TG+GVI +QG L Y+ SG I+T D +LP RLK I A V E++ + PD Sbjct: 4 ILGIDPGSRVTGYGVIRQQGRHLIYLGSGCIRTSDLELPLRLKQIYAGVSEIITQFQPDA 63 Query: 63 AAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQVQ 122 AIE+VF+ N S L LGQARG+AI A V A+L V EY A +KQAV G G A K+QVQ Sbjct: 64 FAIEQVFMAKNADSALKLGQARGSAIVAAVNAELPVYEYAARLIKQAVVGTGAADKSQVQ 123 Query: 123 EMVARLLKLPGLPXGAGNGGAAAQAARGVAICHAHGGGVLSDLGALAPALARKG 176 MV ++LKLPG P A A A GVAICHA+ L L A + AR+G Sbjct: 124 HMVQQMLKLPGKPQ------ADAADALGVAICHANTNKTLIALAGQATS-ARRG 170 >YPO2056 [L] COG0817 Holliday junction resolvasome, endonuclease subunit Ype Yersinia pestis Length = 173 Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/133 (57%), Positives = 94/133 (70%) Query: 3 ILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTPDC 62 +LGIDPG R TG+GVI +QG L+Y+ SG I+T D+P+RLK+I A V E++ + PD Sbjct: 4 VLGIDPGSRVTGYGVIRQQGRQLTYLGSGCIRTVVDDMPTRLKLIYAGVTEIITQFQPDF 63 Query: 63 AAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQVQ 122 AIE+VF+ NP S L LGQARGAAI A V +L V+EY A QVKQ V G G A+K+QVQ Sbjct: 64 FAIEQVFMAKNPDSALKLGQARGAAIVAAVNLNLPVSEYAARQVKQTVVGTGAAEKSQVQ 123 Query: 123 EMVARLLKLPGLP 135 MV LLKLP P Sbjct: 124 HMVRSLLKLPANP 136