BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0309.p         (597 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC2213 [M] COG2885 Outer membrane protein and related peptidogly...    84   9e-16
RSp0761 [M] COG2885 Outer membrane protein and related peptidogl...    76   2e-13
VC1195 [M] COG2885 Outer membrane protein and related peptidogly...    74   8e-13
PA1041 [M] COG2885 Outer membrane protein and related peptidogly...    73   2e-12
FN1265 [M] COG2885 Outer membrane protein and related peptidogly...    72   3e-12

>VC2213 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Vch Vibrio
           cholerae
          Length = 321

 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 59/90 (65%)

Query: 184 AEIQDLNLRKQYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGS 243
           A +Q L+    YL +  Q K+ +VGHTD TGS   N  LSERRA+AV++ ++  G+ A  
Sbjct: 222 ATVQKLDKIVGYLNQYPQAKVEVVGHTDSTGSEAYNQKLSERRAQAVAKALEAQGIDASR 281

Query: 244 LYFQGAGEFYPVASNETEEGRAKNRRVEIV 273
           +  +G GE  P+ASN T EGR KNRRVE+V
Sbjct: 282 ISAKGLGESSPIASNATAEGREKNRRVELV 311


>RSp0761 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 277

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 19/119 (15%)

Query: 154 HFESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDDT 213
            FE+ S  LTP+ R     +AA                    L ++  RK+ +VGHTD++
Sbjct: 174 EFETGSATLTPKGRGILDEMAAV-------------------LPRLNGRKIEIVGHTDNS 214

Query: 214 GSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEI 272
           GS  +N +LS+ RA  V  ++   G   G+L   G G   PVA N T+EGR++NRR+E 
Sbjct: 215 GSRAMNLNLSQARAETVKNYLISKGAEPGTLTAIGVGPDQPVAPNATDEGRSRNRRIEF 273


>VC1195 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Vch Vibrio
           cholerae
          Length = 223

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 46/69 (66%)

Query: 204 LLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEG 263
           L++ GHTD TGS   N  LSE+RA +V  F+   GVAAG    +G GE +P+ SN T EG
Sbjct: 149 LVIEGHTDSTGSDTTNQVLSEKRAESVRSFLLSQGVAAGRAIARGNGERFPLCSNNTAEG 208

Query: 264 RAKNRRVEI 272
           RA NRRVEI
Sbjct: 209 RACNRRVEI 217


>PA1041 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 210

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query: 183 AAEIQDLNLRKQYLE-KMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAA 241
           AA+ + LN   + L+ + A  +L + GHTD  GS   N  LSERRA AV+ ++ + GV +
Sbjct: 114 AADSEKLNGIAERLKGEAASTRLSITGHTDSVGSDAYNQKLSERRANAVANYLIDAGVPS 173

Query: 242 GSLY-FQGAGEFYPVASNETEEGRAKNRRVEIV 273
             +   QG GE  PVA N+T EGRA+NRRVEI+
Sbjct: 174 SIIVGVQGLGESQPVADNKTREGRAENRRVEIL 206


>FN1265 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Fnu
           Fusobacterium nucleatum
          Length = 202

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 43/202 (21%)

Query: 71  VGGDNKGLLIGGALGGLIGGLIGNDIDKRRCELSKIAKQYQLDVQVTALDTRGEAIAGAD 130
           +G D KG LIG A+G L+G   G   D +  EL                       A   
Sbjct: 38  IGKDTKGTLIGAAVGSLLGMGWGAYRDNQERELK----------------------AKLQ 75

Query: 131 SGKAKQETAGSVVEIRDPAGAGGHFESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLN 190
             +A+    G+ + I  P G    F S+S  +T     +++A                LN
Sbjct: 76  GTQAQVRKDGNALVINLPGGV--TFASDSANITS---GFYSA----------------LN 114

Query: 191 LRKQYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAG 250
              Q L    + ++ + G+TD+TG    N +LS+RRA AV++++   GV++  +   G G
Sbjct: 115 GIAQSLNNYPETRIQVNGYTDNTGKDAHNQELSQRRANAVAQYLIAQGVSSNRIVANGFG 174

Query: 251 EFYPVASNETEEGRAKNRRVEI 272
              P+ASN T EGR +NRRVEI
Sbjct: 175 SSNPIASNSTPEGRLQNRRVEI 196