BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0301.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0197 [E] COG1605 Chorismate mutase Rso Ralstonia solanacearum       63   3e-10
XF1141 [E] COG1605 Chorismate mutase Xfa Xylella fastidiosa 9a5c       61   1e-09

>RSp0197 [E] COG1605 Chorismate mutase Rso Ralstonia solanacearum
          Length = 155

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 51/101 (50%)

Query: 45  RLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIV 104
           RL  A  VA SKW++   + DP REA ++ +V+ +A   GL A      F DQ EA K V
Sbjct: 7   RLTTADQVALSKWDTGQSVYDPEREAKVIANVSGQAPAYGLTAEEVASVFADQMEANKTV 66

Query: 105 QRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAAL 145
           Q  L   WR +   P A    L   +RP LD L   +LA L
Sbjct: 67  QYALLNGWRRDGAAPSAPRQSLRDVIRPRLDTLQASILAGL 107


>XF1141 [E] COG1605 Chorismate mutase Xfa Xylella fastidiosa 9a5c
          Length = 191

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 13  ALIATLLLSACATSTPPAARSDVEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPAREAVI 72
           A I  L L    T    +A S +  LL     R  +   VA SKW++  P+ D +RE  +
Sbjct: 15  AFIINLSLFGY-TDQAHSAPSTLTTLLGKVAERNAIGDEVALSKWDTGKPVLDASRETAV 73

Query: 73  LDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRP 132
           L  V  +A +  LD     RFF  Q E+ K+VQ  L  +W++  + P    P+L + +R 
Sbjct: 74  LQSVRDQAPQYRLDPDLAARFFSAQIESNKLVQYQLLNRWQLRGKAPNRTRPNL-IALRD 132

Query: 133 VLDRLTPDLLAALAR 147
            LD L  +LL ALA+
Sbjct: 133 RLDHLQNELLDALAQ 147