BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0293.p (324 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2143 [G] COG1175 ABC-type sugar transport systems, permease c... 417 e-116 SMc01497 [G] COG1175 ABC-type sugar transport systems, permease ... 367 e-101 PA2339 [G] COG1175 ABC-type sugar transport systems, permease co... 356 5e-98 mll4925 [G] COG1175 ABC-type sugar transport systems, permease c... 351 1e-96 AGl3284 [G] COG1175 ABC-type sugar transport systems, permease c... 351 1e-96 >RSc2143 [G] COG1175 ABC-type sugar transport systems, permease components Rso Ralstonia solanacearum Length = 317 Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/316 (63%), Positives = 253/316 (80%) Query: 9 VSSTSSMMQSTSQPASRRQQTSPPRKERFNPIRLMQTPSVLILLAWMIVPLAMTIYFSVN 68 V + + S S + + SP R + + +PSV LL WM +PLAMTI+FS + Sbjct: 2 VPTMRHLHLSFSHTTAVGKPASPSAPRRRDGASWLVSPSVAALLLWMSIPLAMTIWFSFS 61 Query: 69 RYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGNTALLIGSVLAISVIGGTLLAVLFDQPF 128 RYNL+ PD GF G +NY FL DP+F P+I +T LIG+VL I+V+GG L AVLFD+ F Sbjct: 62 RYNLLNPDVKGFAGFDNYHFLATDPSFGPAIWHTLALIGAVLVITVVGGVLTAVLFDRKF 121 Query: 129 RGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPIDWLAEYPMLSV 188 G+GIARLL+I PFFVMPTV+ALIWKNMI+HPVYG++A MR +GL PIDW A+YP+ +V Sbjct: 122 YGQGIARLLMIAPFFVMPTVSALIWKNMILHPVYGLVASAMRAVGLTPIDWFADYPLTAV 181 Query: 189 IIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGAGPVRIFFYIVLPHLKRAITVVIMI 248 +IIVAWQW+PFAFLIL TA+QSLD +QKEAA++DGAGP+ +FFYI LPHLKRAI VV+M+ Sbjct: 182 VIIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVMM 241 Query: 249 ETIFLLSVFAEIFTTTAGGPGTATTNLTFLVYSIGLQQFDIGIASAGGIFAVVLANIVSF 308 ETIFLLS+FAEI+TTT GGPG ATTNL++L+Y++GLQQFD+G+ASAGGI AVV+ANIVSF Sbjct: 242 ETIFLLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVVANIVSF 301 Query: 309 FLVRMLARNLKGVNEK 324 FLVRMLA+NLKG ++ Sbjct: 302 FLVRMLAKNLKGEYQQ 317 >SMc01497 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 290 Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/280 (65%), Positives = 225/280 (80%) Query: 41 RLMQTPSVLILLAWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIG 100 RLM PSVL+LLAWMIVPLAMTIYFS+ RYNL+ P F GL NY + L DPAF+ +I Sbjct: 11 RLMIAPSVLLLLAWMIVPLAMTIYFSLLRYNLLMPGMEEFAGLTNYTYFLTDPAFFQAIF 70 Query: 101 NTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 160 NT ++ VL I+V+GG LA+L DQP G+GI R+LVI PF +MPTVAAL+WKNM M+P Sbjct: 71 NTLAIVLGVLFITVVGGIGLALLLDQPMFGQGIVRILVIAPFLIMPTVAALVWKNMFMNP 130 Query: 161 VYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQ 220 V G+ A++ + LGL+P D+LA P+LS+I+IVAWQW+PFA LILLTALQSLD +QKEAAQ Sbjct: 131 VNGLFAWLAKLLGLQPFDFLANAPLLSIILIVAWQWLPFATLILLTALQSLDEEQKEAAQ 190 Query: 221 LDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVY 280 +DGAG V F Y+VLPHL RAIT+VI+I+TIFLLSVFAEI TT GGPGT +TNLTFLVY Sbjct: 191 MDGAGAVSRFIYLVLPHLSRAITMVILIQTIFLLSVFAEILVTTNGGPGTQSTNLTFLVY 250 Query: 281 SIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLKG 320 + L QFD+G ASAGGI AV+LANIV+FFL+RM+ + L+ Sbjct: 251 AQALLQFDVGGASAGGIIAVILANIVAFFLMRMIGKTLEA 290 >PA2339 [G] COG1175 ABC-type sugar transport systems, permease components Pae Pseudomonas aeruginosa Length = 310 Score = 356 bits (913), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 176/282 (62%), Positives = 222/282 (78%), Gaps = 1/282 (0%) Query: 38 NPIRLMQTPSVLILLAWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWP 97 P L+ +PSV +LL WMIVPL MT+YFS+ RYNL+ P + FVGLEN+ F + D F P Sbjct: 25 GPGWLLVSPSVALLLLWMIVPLGMTLYFSLIRYNLLYPGENAFVGLENFTFFVTDAGFLP 84 Query: 98 SIGNTALLIGSVLAISVIGGTLLAVLFDQ-PFRGRGIARLLVIGPFFVMPTVAALIWKNM 156 NT LL+GSVLAISV G L+A L + F GRG R+L+I PFF+MPTV+AL+WKN+ Sbjct: 85 GALNTLLLVGSVLAISVAFGVLIAALLEAGEFFGRGAVRVLLISPFFIMPTVSALLWKNL 144 Query: 157 IMHPVYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQK 216 I HPV GILA V R G EP+DWLA YP+LS+I+IV+WQW+PFA LIL+TA+QSLD +QK Sbjct: 145 IFHPVSGILAAVWRLFGAEPVDWLAHYPLLSIILIVSWQWLPFAILILMTAMQSLDQEQK 204 Query: 217 EAAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLT 276 EAA+LDGAGP+ IF+++ LPHL R I VV+MIETIFLLSVFAEIFTTT+GGPG +TNL Sbjct: 205 EAARLDGAGPLAIFWHLTLPHLARPIAVVLMIETIFLLSVFAEIFTTTSGGPGYESTNLA 264 Query: 277 FLVYSIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNL 318 +L+Y+ L QFD+G+ASAGG+ AV++ANI + LVRM+ +NL Sbjct: 265 YLIYNQALLQFDVGMASAGGLIAVLIANIAAIVLVRMIGKNL 306 >mll4925 [G] COG1175 ABC-type sugar transport systems, permease components Mlo Mesorhizobium loti Length = 293 Score = 351 bits (901), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 173/279 (62%), Positives = 215/279 (77%) Query: 41 RLMQTPSVLILLAWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIG 100 R M PSV++LL WM++PLA+T++FS +YN + P GFVG NYA +PAF SI Sbjct: 14 RFMMAPSVVLLLVWMVIPLALTLWFSFQQYNPLNPIHDGFVGFSNYALFWSNPAFLQSIL 73 Query: 101 NTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 160 NT +L+ SVL I+VIGG LLA+L DQP G+GI R+LVI PFFVMP VAAL+WKNMIMHP Sbjct: 74 NTLVLVISVLLITVIGGILLALLIDQPMWGQGIVRILVISPFFVMPPVAALVWKNMIMHP 133 Query: 161 VYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQ 220 YG+ A + R G +PIDW ++PM ++IIIVAWQW+PFA LILLTALQSLD +QKEAA+ Sbjct: 134 QYGVFADIARFFGAQPIDWFGQHPMTAIIIIVAWQWLPFATLILLTALQSLDGEQKEAAE 193 Query: 221 LDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVY 280 +DGAG + F Y+ LPH+ RAITVVI+I+TIFLLSV+AEI TT GGPG A+TNL FLVY Sbjct: 194 MDGAGFISRFIYLTLPHMSRAITVVILIQTIFLLSVYAEILVTTNGGPGYASTNLPFLVY 253 Query: 281 SIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLK 319 L +F IG ASAGG+ AV+LANIV+FF +R + +NL Sbjct: 254 QKALLEFKIGQASAGGVIAVILANIVAFFAMRAVGKNLD 292 >AGl3284 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 290 Score = 351 bits (900), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 173/279 (62%), Positives = 215/279 (77%) Query: 41 RLMQTPSVLILLAWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIG 100 R+M PSVL+LL WMIVPLAMT++FS YNL+ P F GL NY + DPAF+ SI Sbjct: 11 RVMLAPSVLLLLVWMIVPLAMTLWFSFQNYNLLNPANVSFAGLFNYQYFYTDPAFFQSIW 70 Query: 101 NTALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHP 160 NT L++G VL I+V+GG +A+L D G+GI R+++I PFFVMP VAAL+WKNMIMHP Sbjct: 71 NTLLIVGGVLLITVVGGIAIALLLDNDIFGQGIVRIMIISPFFVMPPVAALVWKNMIMHP 130 Query: 161 VYGILAYVMRHLGLEPIDWLAEYPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQ 220 YG+LA + R GL+P+DW A++P+LS+IIIVAWQW+PFA LILLTALQSLD +QKEAA+ Sbjct: 131 GYGVLADLSRFFGLQPVDWFAQFPLLSIIIIVAWQWLPFATLILLTALQSLDGEQKEAAE 190 Query: 221 LDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTATTNLTFLVY 280 +DGA V F Y+ LPHL RAITVVI+I+TIFLL V+AEI TT GGPG A+TNL FL+Y Sbjct: 191 MDGANFVNRFIYLTLPHLARAITVVILIQTIFLLGVYAEILVTTNGGPGYASTNLAFLIY 250 Query: 281 SIGLQQFDIGIASAGGIFAVVLANIVSFFLVRMLARNLK 319 L +D+G ASAGGI AVVLANIV+ FL+R + +NL Sbjct: 251 RTALLGYDVGGASAGGIIAVVLANIVAIFLMRAVGKNLD 289