BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0276.p (560 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 366 e-101 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 355 2e-97 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 351 3e-96 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 340 6e-93 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 340 6e-93 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/334 (65%), Positives = 260/334 (77%), Gaps = 11/334 (3%) Query: 212 RHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRK 271 R L R LGG+P YA ++A +IA GDL+V I TR D DSL+ AM MR L + +R Sbjct: 216 RGLQRALGGDPAYAAEVANRIAGGDLSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRG 275 Query: 272 GSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALA 331 SETI TA+ EIA GNLDLS RTEQQA +LEETAS+ME+L STV+QNA+NA+QAN LA++ Sbjct: 276 ASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVS 335 Query: 332 ASDVAVQGGSIVSQVVETMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQ 391 ASDVAV+GG +VS+VVETM SINASS+K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 336 ASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 395 Query: 392 GRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRV 451 GRGFAVVA EVRSLAQRSA+AAKEIK LI DSV V+ GS LVE+AG+TM +IV S+RRV Sbjct: 396 GRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRV 455 Query: 452 TDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLV 511 TD++ EI A++EQ SGIE+V+ A+ Q+DD TQQNAALVEQAAAAA+SLQEQA L Q+V Sbjct: 456 TDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVV 515 Query: 512 SVFRLDA---------AQAHGHIAAPAHAPAAVE 536 + FRLD A+A IA P P A E Sbjct: 516 AQFRLDPTMSAVRSVVAKAEPTIAPP--VPKAAE 547 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 355 bits (911), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 227/531 (42%), Positives = 337/531 (63%), Gaps = 34/531 (6%) Query: 1 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 60 M++G RLG FA VV LL+ + GI + + +V + AL ++ + Sbjct: 6 MRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNGYKA 65 Query: 61 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQ---KLQQLFAESSDTSDEEKA---- 113 + L NL+L PE + +Y+ + + AQ +L++L T+D+ KA Sbjct: 66 NGILSNLLLVTTPEQ---KTKYMSDYAAIRQANAQAYGRLEKLL-----TTDQGKALFKE 117 Query: 114 ---ALPKIAAQASKAEKLINEAVEFGKRREAY--ELAQFLKEQYLPVQKSWQVELKALAA 168 A A K L+ +A + R Y ++++ Y+ V K V+ +A Sbjct: 118 QFDARSAYGASVRKFFALV-DADNVQEARALYQGDMSRLQDRYYVLVDK--MVDHQA-GE 173 Query: 169 LEDQLNKEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQI 228 +E +++ AA+ + A++ M++++ + + A+ ++TR + R + ++A+ + Sbjct: 174 MEHDVSEAAAQGA-----NAKIQMIVLAVLATLLAIATGAFITRTITRPI----NHAMHL 224 Query: 229 AGQIAEGDLAVVIDTRAGDH-DSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGN 287 A +A+G+L +++ D L+AA++ M + L IV++VR G++TIT ASSE+A GN Sbjct: 225 AEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGN 284 Query: 288 LDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVV 347 +DLS RTEQQA +LEETA++MEQL STVKQNA+NA +A+ LA AS VA +GG V + + Sbjct: 285 IDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAI 344 Query: 348 ETMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 407 +TM +IN SS+K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQ Sbjct: 345 QTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQ 404 Query: 408 RSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSS 467 RSA+AAKEIK LI DSVG V G+ VE+AG + D+V I+ VT++++EI+ ++REQS Sbjct: 405 RSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSD 464 Query: 468 GIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDA 518 GIEQ+NEAI Q+D TQ+NA+LVE++A AA++LQ+QA L +VS F+L A Sbjct: 465 GIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLHA 515 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 351 bits (900), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 201/334 (60%), Positives = 264/334 (79%), Gaps = 4/334 (1%) Query: 184 AYSRARM--LMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVI 241 AY R+ + L+ ++ G VT LA F + R++ R LGGEP YA +IA +IA+GDLAV + Sbjct: 182 AYVRSLIANLIAILVVGGAVT--LAMFLIIRNVQRGLGGEPAYATEIARRIADGDLAVRV 239 Query: 242 DTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGAL 301 TR D +S++ AM M+ +L + ++ +++I +A+ +IA GN DLS RTE+QA +L Sbjct: 240 QTRPDDRNSMLFAMARMQQQLTGTIGHIKTSADSIASATQQIATGNADLSQRTEEQASSL 299 Query: 302 EETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINASSQKVA 361 EETASSME+L S VKQNA+NA QA+ LA+ ASD+AV+GG +V +VV+TM IN SS+K+A Sbjct: 300 EETASSMEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVDTMAGINDSSKKIA 359 Query: 362 DIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIG 421 DI+ VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIKVLI Sbjct: 360 DIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKVLIS 419 Query: 422 DSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDD 481 DSVG+VENG+ LV +AG+ + ++V +++RVTD+M EI+ A+ EQSSGIEQVN+A+ Q+D+ Sbjct: 420 DSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDE 479 Query: 482 MTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFR 515 +TQQNAALVE+AAAAA SL+EQA L+ V+ FR Sbjct: 480 VTQQNAALVEEAAAAALSLEEQATLLRDAVASFR 513 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 340 bits (872), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 185/298 (62%), Positives = 234/298 (78%) Query: 219 GGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITT 278 GGEP A Q +A+GDL+ VI A D SL+A ++ M+ L+ IVA VR +E++ T Sbjct: 216 GGEPSVAAQAVSAMAQGDLSRVIAVDADDRTSLLAKLKEMQASLSGIVATVRNNAESVAT 275 Query: 279 ASSEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQ 338 AS++IA+GN DLS RTEQQA AL+ET+++M++L STV NAENA QAN LA AS VA + Sbjct: 276 ASAQIAQGNQDLSHRTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAE 335 Query: 339 GGSIVSQVVETMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 398 GG +VSQVV M+ IN S+K+ADI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 336 GGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 Query: 399 ASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEI 458 A+EVRSLAQRSA+AAKEIK LI SV +VE G+ LV++AG+TM IV +I+RV++++ EI Sbjct: 396 AAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEI 455 Query: 459 NHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRL 516 + A+ EQSSG+ QV +A+ Q+D+ TQQNAALVEQ+AAAA SLQ QA L Q V+VF+L Sbjct: 456 SSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 340 bits (871), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 196/307 (63%), Positives = 249/307 (81%) Query: 210 LTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEV 269 L R L R+LGG+P YA IA +IA GDLA+ ++TR GD DS++ AM M+ +L ++ + Sbjct: 207 LARGLQRQLGGDPAYAADIAARIAAGDLAMRVETRPGDRDSVLFAMAQMQRELTGTISHI 266 Query: 270 RKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLA 329 + +++I +A+ +IA GN DLS RTEQQA +LEETASSME+L S VKQNA+NA QA+ LA Sbjct: 267 KHSADSIASATQQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLA 326 Query: 330 LAASDVAVQGGSIVSQVVETMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAG 389 + ASDVAV+GG +V +VVETM IN SS+K+ADI+ VI+GIAFQTNILALNAAVEAARAG Sbjct: 327 VNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAG 386 Query: 390 EQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIR 449 EQGRGFAVVA EVRSLAQRSA AAKEIK LIGDSVG+V NG+ LVE+AG+ + ++V +++ Sbjct: 387 EQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRVRNGTALVEEAGAVIDEVVVAVK 446 Query: 450 RVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQ 509 RVTD+M EI+ A+ EQSSGIEQVN+A+ Q+D +TQQNAALVEQAAAAA SL+EQA L+ Sbjct: 447 RVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAALSLEEQAQVLRT 506 Query: 510 LVSVFRL 516 V F++ Sbjct: 507 AVGRFQM 513