BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0266.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralst... 251 1e-66 VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio... 198 1e-50 NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neiss... 189 7e-48 NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neiss... 186 3e-47 PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudo... 179 4e-45 >RSc0675 [K] COG1678 Putative transcriptional regulator Rso Ralstonia solanacearum Length = 190 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/195 (63%), Positives = 144/195 (73%), Gaps = 8/195 (4%) Query: 59 PPLELDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINL 118 P ++LTN FLIAMP M DP F GTVVYLCEHN GALG+VIN+P D+ + LFD+I+L Sbjct: 4 PDAPINLTNQFLIAMPGMADPTFSGTVVYLCEHNERGALGLVINRPIDIDLATLFDKIDL 63 Query: 119 KLEIQPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVL 178 KLEI P L +PV +GGPVQ ERGFVLH YSS+L V + +TTSKDVL Sbjct: 64 KLEIHP--------LAEQPVYYGGPVQTERGFVLHDAMGSYSSSLTVPGGLEMTTSKDVL 115 Query: 179 EAVAHGNGPDRVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPSIIFELPVEERFTAALAL 238 EAVA G GP R ++TLG +GWS GQLE EIGRNGWLTV+ADP IIF +P EERF AAL L Sbjct: 116 EAVARGGGPQRFILTLGYAGWSAGQLEEEIGRNGWLTVQADPEIIFNVPAEERFAAALRL 175 Query: 239 LGIDPVMLSGDAGRA 253 LGI+P MLSG+AG A Sbjct: 176 LGINPAMLSGEAGHA 190 >VC0467 [K] COG1678 Putative transcriptional regulator Vch Vibrio cholerae Length = 200 Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 90/191 (47%), Positives = 131/191 (68%), Gaps = 4/191 (2%) Query: 63 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEI 122 ++LTNHFL+AMPSM DP F +V+Y+CEHN +GA+G++IN P D+T+ + ++ +I Sbjct: 14 MNLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQV----DI 69 Query: 123 QPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 182 +P P + E ++PV GGPV +RGF+LH + Y S++++TD++A+TTSKD+L + Sbjct: 70 EPAYPQSHQENLKKPVFNGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDILTVLG 129 Query: 183 HGNGPDRVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPSIIFELPVEERFTAALALLGID 242 P+ +V LG SGWS GQLE E+ N WLT++ADP +IF PV E++ A+ LGI Sbjct: 130 TEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQKLGIS 189 Query: 243 PVMLSGDAGRA 253 P LS DAG A Sbjct: 190 PAQLSSDAGHA 200 >NMB1336 [K] COG1678 Putative transcriptional regulator Nme Neisseria meningitidis MC58 Length = 182 Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 130/193 (67%), Gaps = 13/193 (6%) Query: 63 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRI--NLKL 120 ++L+NHFLIAMP M D F +VVY+C+H+ +GALG+ INKP+ +TMD++F N+ + Sbjct: 1 MNLSNHFLIAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPM 60 Query: 121 EIQPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEA 180 +Q D+ VM GGPVQVERG+V+H+ + S++ V+D +ALT+S+DV+E Sbjct: 61 RMQHDS-----------VMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIEN 109 Query: 181 VAHGNGPDRVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPSIIFELPVEERFTAALALLG 240 ++ D+ L+++G S WS GQLE E+ N WLTV AD I+F++P E R+ AA A LG Sbjct: 110 ISREGAVDKALISIGYSSWSKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLG 169 Query: 241 IDPVMLSGDAGRA 253 IDP+ L AG A Sbjct: 170 IDPLALFSGAGHA 182 >NMA1550 [K] COG1678 Putative transcriptional regulator NmA Neisseria meningitidis Z2491 Length = 182 Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 129/193 (66%), Gaps = 13/193 (6%) Query: 63 LDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRI--NLKL 120 ++L+NHFL+AMP M D F +VVY+C+H+ +GALG+ INKP+ +TMD++F N+ Sbjct: 1 MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSPITMDMIFSATGKNIPF 60 Query: 121 EIQPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEA 180 +Q D+ VM GGPVQVERG+V+H+ + S++ V+D +ALT+S+DV+E Sbjct: 61 RMQHDS-----------VMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTSSRDVIEN 109 Query: 181 VAHGNGPDRVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPSIIFELPVEERFTAALALLG 240 ++ D++L+++G S W GQLE E+ N WLTV AD I+F++P E R+ AA A LG Sbjct: 110 ISREGAVDKILISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHRYAAAFAKLG 169 Query: 241 IDPVMLSGDAGRA 253 IDP+ L AG A Sbjct: 170 IDPLALFSGAGHA 182 >PA0405 [K] COG1678 Putative transcriptional regulator Pae Pseudomonas aeruginosa Length = 189 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 90/191 (47%), Positives = 126/191 (65%), Gaps = 12/191 (6%) Query: 65 LTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLEIQP 124 L +HFLIAMP M DP F TV YL EHN GA+G+VIN+P+ + + + +++ Sbjct: 9 LKHHFLIAMPHMADPNFAQTVTYLVEHNEQGAMGLVINRPSGLNLAEVLEQLK------- 61 Query: 125 DTPDAMP--ELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAVA 182 PDA+P + GGPVQ +RGFVLH + Y STL++ E+A++TS+DVL A+A Sbjct: 62 --PDALPPARCQHIDIYNGGPVQTDRGFVLHPSGLSYQSTLEL-GELAMSTSQDVLFAIA 118 Query: 183 HGNGPDRVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPSIIFELPVEERFTAALALLGID 242 G GP++ L++LG +GW GQLE E+ N WLT ADP+I+F+LP EER +AA A LG++ Sbjct: 119 AGTGPEKSLISLGYAGWEAGQLEAELSDNAWLTCPADPAILFDLPPEERLSAAAARLGVN 178 Query: 243 PVMLSGDAGRA 253 +L+ AG A Sbjct: 179 LSLLTAQAGHA 189