BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0264.p         (170 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0677 Non COG                                                       172   3e-43
PA0403 [F] COG2065 Pyrimidine operon attenuation protein/uracil ...   147   1e-35
DR1110 [F] COG2065 Pyrimidine operon attenuation protein/uracil ...   127   2e-29
lin1954 [F] COG2065 Pyrimidine operon attenuation protein/uracil...   122   3e-28
BH2541 [F] COG2065 Pyrimidine operon attenuation protein/uracil ...   118   5e-27

>RSc0677 Non COG
          Length = 174

 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 123/168 (73%), Gaps = 6/168 (3%)

Query: 4   TPSQLDAEALYQTLVQQIKAGLQG--ATEVALVGIHSGGAWLAERLAVELGLAERLGFVD 61
           T  Q+DAEALYQ+LV Q++  + G  A + ++ GI SGGAW+A RLA++LGL E  G V+
Sbjct: 2   TSQQIDAEALYQSLVAQLRTRMAGTPAGDWSVAGIVSGGAWIAARLALDLGLRE-YGIVN 60

Query: 62  VSFYRDDFSEKGLRADVKPSQVPFDVEGATILLVDDVLYTGRTTRAAINELFDYGRPARV 121
           V+ +RDD+++KGL A  +P+ +PF+VE   ILLVDDVL TGRT RAAINELFDYGRPA V
Sbjct: 61  VALHRDDYAKKGLHAQAQPTTLPFEVEERRILLVDDVLATGRTIRAAINELFDYGRPAAV 120

Query: 122 LLAALVDRGGRELPIAADFVAASVELSKQENLQLQRADDG---RFSLT 166
            LA LVDRG R+LPIA D++   + L+  E+L L++  +G   RF+ T
Sbjct: 121 ELAVLVDRGERQLPIAPDYIGERIALAADESLVLRQEGEGASARFTFT 168


>PA0403 [F] COG2065 Pyrimidine operon attenuation protein/uracil
           phosphoribosyltransferase Pae Pseudomonas aeruginosa
          Length = 170

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 91/130 (70%)

Query: 26  QGATEVALVGIHSGGAWLAERLAVELGLAERLGFVDVSFYRDDFSEKGLRADVKPSQVPF 85
           +G      VGIH+GG W+AE L  ELG  E LG +DVSFYRDDF++ GL   V+PS +PF
Sbjct: 24  RGIERPRFVGIHTGGIWVAEALLRELGNQEPLGTLDVSFYRDDFTQNGLHPQVRPSALPF 83

Query: 86  DVEGATILLVDDVLYTGRTTRAAINELFDYGRPARVLLAALVDRGGRELPIAADFVAASV 145
           +++G  ++LVDDVL +GRT RAA+NELFDYGRPA V L  L+D   RELPI  D V  ++
Sbjct: 84  EIDGQHLVLVDDVLMSGRTIRAALNELFDYGRPASVTLVCLLDLNARELPIRPDVVGQTL 143

Query: 146 ELSKQENLQL 155
            L + E ++L
Sbjct: 144 SLGRDERVKL 153


>DR1110 [F] COG2065 Pyrimidine operon attenuation protein/uracil
           phosphoribosyltransferase Dra Deinococcus radiodurans
          Length = 183

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 93/140 (66%), Gaps = 6/140 (4%)

Query: 26  QGATEVALVGIHSGGAWLAERLAVEL----GLAERLGFVDVSFYRDDFSEKGLRADVKPS 81
           +GA  +A++G+H+ G  LAERLA +L    G+    G +D++ YRDD SE   +  ++ +
Sbjct: 30  KGAENLAIIGVHTRGIPLAERLASKLSELEGVEVPRGMLDITLYRDDLSEVARQPIIRET 89

Query: 82  QVPFDVEGATILLVDDVLYTGRTTRAAINELFDYGRPARVLLAALVDRGGRELPIAADFV 141
           QVPFD+    ++LVDDVLYTGRT RAA++ L D GRP  + LA LVDRG RELPI AD+V
Sbjct: 90  QVPFDLADRRVILVDDVLYTGRTVRAALDALIDLGRPEGIQLAVLVDRGHRELPIRADYV 149

Query: 142 AASVELSKQE--NLQLQRAD 159
             ++  +K E   ++LQ  D
Sbjct: 150 GKNLPTAKHEVVKVKLQETD 169


>lin1954 [F] COG2065 Pyrimidine operon attenuation protein/uracil
           phosphoribosyltransferase Lin Listeria innocua
          Length = 183

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 90/141 (63%), Gaps = 7/141 (4%)

Query: 26  QGATEVALVGIHSGGAWLAERLAVEL----GLAERLGFVDVSFYRDDFS---EKGLRADV 78
           +G   +ALVGI + G +LAERL   +    G+   +G +D++ YRDD S   +K     V
Sbjct: 29  KGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAV 88

Query: 79  KPSQVPFDVEGATILLVDDVLYTGRTTRAAINELFDYGRPARVLLAALVDRGGRELPIAA 138
             + +PFD+ G  ++LVDDVLYTGRT RAA++ L D GRPA++ LA L DRG RELPI A
Sbjct: 89  HGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRA 148

Query: 139 DFVAASVELSKQENLQLQRAD 159
           D+V  ++  S  E ++++  D
Sbjct: 149 DYVGKNIPTSGNERVEVRLTD 169


>BH2541 [F] COG2065 Pyrimidine operon attenuation protein/uracil
           phosphoribosyltransferase Bha Bacillus halodurans
          Length = 180

 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 86/134 (64%), Gaps = 6/134 (4%)

Query: 26  QGATEVALVGIHSGGAWLAERLAVEL----GLAERLGFVDVSFYRDDFSEKGLRAD--VK 79
           +G ++  LVGI + G +LA RL   +    G+   +G VD++ YRDD + K    +  ++
Sbjct: 27  KGVSDCLLVGIKTRGIYLANRLQERIETIEGIKLPVGEVDITLYRDDLTVKSTTEEPILQ 86

Query: 80  PSQVPFDVEGATILLVDDVLYTGRTTRAAINELFDYGRPARVLLAALVDRGGRELPIAAD 139
            + VP DV G  ++L+DDVLYTGRT RAA++ L D GRP ++ LA L+DRG RELPI  D
Sbjct: 87  GTDVPVDVTGKKVILIDDVLYTGRTVRAALDALMDLGRPEQIQLAVLIDRGHRELPIRPD 146

Query: 140 FVAASVELSKQENL 153
           +V  +V  SKQE +
Sbjct: 147 YVGKNVPTSKQEQI 160