BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0252.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0453 [S] COG1238 Predicted membrane protein Rso Ralstonia sol...   190   1e-48
yqaA [S] COG1238 Predicted membrane protein Eco Escherichia coli...    96   2e-20
Z3990 [S] COG1238 Predicted membrane protein EcZ Escherichia col...    94   1e-19
ECs3551 [S] COG1238 Predicted membrane protein Ecs Escherichia c...    94   1e-19
STM2819 [S] COG1238 Predicted membrane protein Sty Salmonella ty...    89   6e-18

>RSc0453 [S] COG1238 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 193

 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 122/182 (67%), Gaps = 27/182 (14%)

Query: 2   IESAVLWLLNILAIPTVGLTSVFLISFVSATLLPLGSEPAVFAVIKASPDMFWPVILIAT 61
           +E+ + WLL  LA+P VGL ++F++ FVSATLLPLGSEPAVF  IK +P+MFWP I +A 
Sbjct: 1   METWIAWLLATLALPNVGLPAIFIVCFVSATLLPLGSEPAVFGYIKLNPEMFWPAIFVAA 60

Query: 62  LGNTLGGIVDYWMGYGAKQA-----FAKER----------------------STRWFHWL 94
            GNTLGG VD+WMGY AK A      A+ R                        ++F W+
Sbjct: 61  AGNTLGGAVDWWMGYAAKLALVRFHLARRRRQHDTEHVQHIPHPQRHRAPPLDKKYFRWM 120

Query: 95  ERFGAKTMLLAWLPGIGDPICTLAGWLRLPFWPSVVYMAIGKFIRYVLMTWLLLNVPDGF 154
            R G  ++L +W+PGIGDP+CTLAGWLRL FWPSV YMAIGKF+RY++MT  LL +PD F
Sbjct: 121 RRIGPVSLLASWVPGIGDPLCTLAGWLRLSFWPSVAYMAIGKFLRYLVMTAALLTLPDRF 180

Query: 155 WH 156
           WH
Sbjct: 181 WH 182


>yqaA [S] COG1238 Predicted membrane protein Eco Escherichia coli K12
          Length = 142

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 84/128 (65%), Gaps = 8/128 (6%)

Query: 18  VGLTSVFLISFVSATLLPLGSEPAVFAVIKASPDMFWPVILIATLGNTLGGIVDYWMGYG 77
           + L S+F  SF+SATLLP  SE  + A++ +     W ++L AT+GN+LGG+ +  +G  
Sbjct: 5   LSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISHPWVLVLTATMGNSLGGLTNVILG-- 62

Query: 78  AKQAFAKERSTRWFH----WLERFGAKTMLLAWLPGIGDPICTLAGWLRLPFWPSVVYMA 133
             + F   +++RW      WL+R+GA T+LL+W+P +GD +C LAGW+R+ + P + ++ 
Sbjct: 63  --RFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLC 120

Query: 134 IGKFIRYV 141
           +GK +RYV
Sbjct: 121 LGKALRYV 128


>Z3990 [S] COG1238 Predicted membrane protein EcZ Escherichia coli O157:H7
           EDL933
          Length = 142

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 84/127 (66%), Gaps = 6/127 (4%)

Query: 18  VGLTSVFLISFVSATLLPLGSEPAVFAVIKASPDMFWPVILIATLGNTLGGIVDYWMGYG 77
           + L S+F  SF+SATLLP  SE  + A++ +     W ++L AT+GN+LGG+ +  +G  
Sbjct: 5   LSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISHPWVLVLTATMGNSLGGLTNVILGRF 64

Query: 78  A---KQAFAKERSTRWFHWLERFGAKTMLLAWLPGIGDPICTLAGWLRLPFWPSVVYMAI 134
               K +  +E++T    WL+R+GA T+LL+W+P +GD +C LAGW+R+ + P + ++ +
Sbjct: 65  CPLRKTSRWQEKAT---GWLKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLCL 121

Query: 135 GKFIRYV 141
           GK +RYV
Sbjct: 122 GKALRYV 128


>ECs3551 [S] COG1238 Predicted membrane protein Ecs Escherichia coli O157:H7
          Length = 142

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 84/127 (66%), Gaps = 6/127 (4%)

Query: 18  VGLTSVFLISFVSATLLPLGSEPAVFAVIKASPDMFWPVILIATLGNTLGGIVDYWMGYG 77
           + L S+F  SF+SATLLP  SE  + A++ +     W ++L AT+GN+LGG+ +  +G  
Sbjct: 5   LSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISHPWVLVLTATMGNSLGGLTNVILGRF 64

Query: 78  A---KQAFAKERSTRWFHWLERFGAKTMLLAWLPGIGDPICTLAGWLRLPFWPSVVYMAI 134
               K +  +E++T    WL+R+GA T+LL+W+P +GD +C LAGW+R+ + P + ++ +
Sbjct: 65  CPLRKTSRWQEKAT---GWLKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLCL 121

Query: 135 GKFIRYV 141
           GK +RYV
Sbjct: 122 GKALRYV 128


>STM2819 [S] COG1238 Predicted membrane protein Sty Salmonella typhimurium
           LT2
          Length = 141

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 75/114 (65%), Gaps = 8/114 (7%)

Query: 32  TLLPLGSEPAVFAVIKASPDMFWPVILIATLGNTLGGIVDYWMGYGAKQAFAKERSTRWF 91
           TLLP  SE  + A++ +     W ++L AT+GN+LGG+ +  +G    + F   +++RW 
Sbjct: 19  TLLPGNSEVVLVAMLVSGVSHPWVLVLTATMGNSLGGVTNVILG----RFFPLRKTSRWQ 74

Query: 92  H----WLERFGAKTMLLAWLPGIGDPICTLAGWLRLPFWPSVVYMAIGKFIRYV 141
                WL+R+GA T+LL+W+P IGD +C LAGW+R+P+  ++ ++ +GK +RYV
Sbjct: 75  EKATGWLKRYGAATLLLSWMPVIGDLLCLLAGWMRIPWGRTIFFLCLGKALRYV 128