BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0204.p (289 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0479 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 372 e-103 PA5428 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 195 1e-49 AGc4564 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 173 4e-43 SMa0097 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 166 4e-41 yjiE [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 148 2e-35 >RSc0479 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 314 Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/266 (65%), Positives = 216/266 (81%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME KWLEDF+SLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLG +LIDR+SYPTRLT A Sbjct: 1 MELKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGNELIDRSSYPTRLTPA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 GEVFYEQA+AML Q++ TRAL+RG+RP + +TIDFAVPHTLSLT+ P WL+ +E G + Sbjct: 61 GEVFYEQALAMLAQVSETRALMRGQRPASASTIDFAVPHTLSLTFFPGWLAKVEEKIGKL 120 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 RL ALNVHDAVMT+V+GGCDL++ YHH RQ +QLD +RYDML +GTE L P+S+ D Sbjct: 121 QCRLRALNVHDAVMTLVDGGCDLVMVYHHARQMIQLDPTRYDMLVLGTERLSPFSKPDVG 180 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 G+P Y +A+ P+ +LSYT NA+LGRMV++++ ++ LDK YETDM+E+LK+MAL Sbjct: 181 GRPIYKLTPAARKPIAYLSYTPNAFLGRMVDVLLENSPVAPLLDKCYETDMAEALKVMAL 240 Query: 241 EGHGVAFLPESSVVREVRNRQLARTD 266 GHGVAFLPES+V +V +L R + Sbjct: 241 AGHGVAFLPESAVRDDVAAGRLVRAE 266 >PA5428 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 108/263 (41%), Positives = 161/263 (61%), Gaps = 4/263 (1%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 +E KWLEDF++LA TRSFS++AE R VTQPAFSRRI+SLE LG L++R P LT A Sbjct: 3 LELKWLEDFIALAGTRSFSQAAEKRFVTQPAFSRRIRSLEDALGLTLVNRQRTPVELTEA 62 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 G++F A +++ Q+ L + FA H+L+L + P+W++ L + +I Sbjct: 63 GQLFLVTARSVVEQLGQVVRHLHHLEGGQGEVLQFAAAHSLALGFFPQWIARLRNEGLNI 122 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 +RLIA NV +AV ++ EG CDL+L ++ P +Q+D + L +G + P + Sbjct: 123 ASRLIATNVGEAVHSLREGSCDLMLAFYDPDAALQMDPEIFPSLHLGRTEMLPVCAVNAE 182 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 G+P +F VP L+Y+++A+LGR V L++ +R L YET M++SLK MAL Sbjct: 183 GQP--LFDLENGQSVPLLAYSASAFLGRGVNLLL--RQRNLRYTTVYETAMADSLKSMAL 238 Query: 241 EGHGVAFLPESSVVREVRNRQLA 263 +G GVA++P SVV E+ +LA Sbjct: 239 QGMGVAWVPRLSVVNELERGELA 261 >AGc4564 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 152/266 (57%), Gaps = 4/266 (1%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 +E KWLEDF++LA T +FS++A+ RHVTQ AFSRRI+ LEAW+G L+DR SYP+RLT A Sbjct: 9 LEVKWLEDFLALAGTLNFSKAADERHVTQSAFSRRIKQLEAWVGATLVDRASYPSRLTEA 68 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 G F A L Q+ + R L + T+ HTLS T+ P WL + G + Sbjct: 69 GAKFVPVAQETLKQLYHARRTLLQEEGADARTVRLTALHTLSFTFFPDWLKRVNEKAGPL 128 Query: 121 NT--RLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCD 178 + R + ++ + + ++V+G D LL Y H P+ LD+ ++ +G E + P S Sbjct: 129 FSVLRPDSGSMEENLNSLVDGQSDFLLTYAHHEVPMLLDAQLFEFRVLGAENIIPVSAPT 188 Query: 179 RNGKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMM 238 ++G P + +AK P +L Y ++ G ++ ++ + R ++ +E MS LK M Sbjct: 189 QDGAPLHALVENAKKPFAYLDYEKASFFGPLLRDLL--SARLPQYERVHEGSMSVGLKAM 246 Query: 239 ALEGHGVAFLPESSVVREVRNRQLAR 264 A+ G GVA++PES + +E+ + L R Sbjct: 247 AMAGWGVAWVPESLMRQELDSGALVR 272 >SMa0097 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 313 Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/275 (38%), Positives = 143/275 (52%), Gaps = 19/275 (6%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 ME KWLEDFV+LA+T SFSR+AELR+VTQPAFSRRI+ LE+WLG LI R + P LT A Sbjct: 1 MEIKWLEDFVTLADTSSFSRAAELRNVTQPAFSRRIKQLESWLGATLISRATMPAELTPA 60 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 G F A + R +LR P I FA HTL++T+ P+WL LE+ GS Sbjct: 61 GRNFLPVAQEAIRTFYAAREVLR--LPHEPGLIRFAALHTLTVTFFPRWLKTLEAAGGSF 118 Query: 121 NTRLIAL--NVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCD 178 +T LI + + +V D L Y HP P LDS ++ LT+ + L P + Sbjct: 119 STSLIPDRGGIEANLDALVGDEADFFLTYAHPEVPFHLDSGQFSSLTVAHDRLIPLVAAE 178 Query: 179 --RNGKPDYVFPG---------SAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHY 227 +G P PG + +P+LSY N++ G + ++ H Sbjct: 179 IVLSGDPQ---PGLNLLDRAIAQPRLAIPYLSYGFNSFFGVALSRLLLRRPPFRRRTTH- 234 Query: 228 ETDMSESLKMMALEGHGVAFLPESSVVREVRNRQL 262 E +S L MA+ G GV +LPES E+ R+L Sbjct: 235 ENTISAGLMNMAVTGAGVCWLPESLAREEIDARRL 269 >yjiE [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 303 Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 148/263 (56%), Gaps = 11/263 (4%) Query: 1 MESKWLEDFVSLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGTDLIDRTSYPTRLTAA 60 +E+KWL DF++L + R+FS++A R+V+QPAFSRRI++LE +G +L +R P +L+ Sbjct: 11 IETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFNRQVTPLQLSEQ 70 Query: 61 GEVFYEQAVAMLGQINNTRALLRGKRPTAQTTIDFAVPHTLSLTYMPKWLSALESGFGSI 120 G++F+ Q +L Q+ + A LRG AQ I A H+LSL +P +S + F Sbjct: 71 GKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSLSLGLLPSIISQMPPLF--- 127 Query: 121 NTRLIALNVHDAVMTIVEGGCDLLLCYHHPRQPVQLDSSRYDMLTMGTETLRPYSRCDRN 180 + A++V +AV + EG D + +H L + +D + + L P D + Sbjct: 128 TWAIEAIDVDEAVDKLREGQSDCIFSFHDE----DLLEAPFDHIRLFESQLFPVCASDEH 183 Query: 181 GKPDYVFPGSAKAPVPFLSYTSNAYLGRMVELMMADTKRPLHLDKHYETDMSESLKMMAL 240 G+ + A+ P L+Y+ N+Y+GR++ + L + + MSE LK +AL Sbjct: 184 GEALF---NLAQPHFPLLNYSRNSYMGRLINRTLT-RHSELSFSTFFVSSMSELLKQVAL 239 Query: 241 EGHGVAFLPESSVVREVRNRQLA 263 +G G+A+LPE ++ +E+R+ +L Sbjct: 240 DGCGIAWLPEYAIQQEIRSGKLV 262