BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0201.p (315 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1342 [ET] COG0834 ABC-type amino acid transport/signal transdu... 300 4e-81 RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transd... 276 6e-74 PA5082 [ET] COG0834 ABC-type amino acid transport/signal transdu... 259 5e-69 RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transd... 258 1e-68 STM0665 [ET] COG0834 ABC-type amino acid transport/signal transd... 245 8e-65 >PA1342 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 302 Score = 300 bits (767), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 149/283 (52%), Positives = 197/283 (69%), Gaps = 1/283 (0%) Query: 13 ASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQ-GYSIDLCLKAAT 71 A++L + V A+E TG LKKIK++GT+TLG RD+SIPFSYL + GYS DL LK Sbjct: 14 AALLSAPVVADELTGTLKKIKETGTITLGHRDASIPFSYLGTEPGKPIGYSHDLQLKVVE 73 Query: 72 AIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQVAFSVTEFVTAN 131 A++K+L L L ++ VTS TRIPL+ NGT DI C S TNN+ER QV FSV F Sbjct: 74 AVKKELNLPELKVRYNLVTSQTRIPLVQNGTVDIECGSTTNNEERQKQVDFSVGIFEVGT 133 Query: 132 KFLSKKAANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAAKDHAEAFLMVE 191 + LSKK AN+K +DLKGK VV+T+GT++ + + A+NA++ +GMNI++AKDH E+F+M+E Sbjct: 134 RLLSKKTANIKDFDDLKGKNVVTTAGTTSERLLKAMNADKKMGMNIISAKDHGESFMMLE 193 Query: 192 TGRAAAFVMDDILLSSLAANSKAPGDYQVSSEALSVEPYGLILPKGDKEFKTVVDDALTV 251 +GRA AF+MDD LL A +K P D+ V S E YG ++ KGD FK VVD A+T Sbjct: 194 SGRAVAFMMDDALLYGEMAKAKKPDDWVVGGTPQSFEIYGCMVRKGDAAFKKVVDKAITD 253 Query: 252 VYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294 Y ++ KIY KWF PIPPKG+NLN PMS +L+ ++A PTD Sbjct: 254 TYASGEVNKIYDKWFTQPIPPKGLNLNFPMSEELKKLIASPTD 296 >RSc0481 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 313 Score = 276 bits (705), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 137/294 (46%), Positives = 189/294 (64%) Query: 1 MKLLKLAGVLVGASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQG 60 M L KLA VL VL S+ HA+E TG LKKIKD+GT+TLGVRDSSIPFSY G Sbjct: 16 MNLAKLATVLAAIGVLSSAAHAQELTGTLKKIKDTGTITLGVRDSSIPFSYNVGGVRTIG 75 Query: 61 YSIDLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQV 120 YS D+ K A++++L L L +K +PVTS RI L+ NGT D+ C S TNN ER Q Sbjct: 76 YSYDVATKVVEAVKEQLKLKDLQVKEIPVTSQNRITLLQNGTIDLECGSTTNNLERQKQA 135 Query: 121 AFSVTEFVTANKFLSKKAANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAA 180 +F+ T F+ + + KK + +K DLKGK VV+T+GT++ + + +N E+ LGMNI++ Sbjct: 136 SFTNTIFIIGTRMMVKKDSGIKDWVDLKGKNVVTTAGTTSERLLRKMNDEKQLGMNIIST 195 Query: 181 KDHAEAFLMVETGRAAAFVMDDILLSSLAANSKAPGDYQVSSEALSVEPYGLILPKGDKE 240 KDH ++FL +E+GRA AF+MDD LL A +K P D+ V + S E YG ++ K D Sbjct: 196 KDHGQSFLTLESGRAVAFMMDDALLYGERAKAKTPADWVVVGKPQSREAYGCMVRKDDAP 255 Query: 241 FKTVVDDALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294 FKT+ D + + K I Y KWF+ P+PPKG+NL+ P+S ++A++ P D Sbjct: 256 FKTLADKTIAGMMKDGSINAEYKKWFEQPVPPKGLNLDFPLSDDMKALIKSPND 309 >PA5082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 299 Score = 259 bits (662), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 131/299 (43%), Positives = 185/299 (61%), Gaps = 3/299 (1%) Query: 1 MKLLKLAGVLVGASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSY-Q 59 MK L + + S+ + + AEE +G LKK+ D+GT+TLG RD+S+PFSYL D Sbjct: 1 MKTLVSSTFALSLSLAIGAAQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPM 60 Query: 60 GYSIDLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQ 119 GYS++L K ++ LG L +K VTS TRIPL+ NGT D+ C S ER Q Sbjct: 61 GYSVELAGKVVERLKSTLGKPELKVKYNLVTSQTRIPLVQNGTVDLECGSTGVTAERQKQ 120 Query: 120 VAFSVTEFVTANKFLSKKAANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNILA 179 VAFS + L++K + + +DLKGK VV+T+GT+N + + NAE LGMN+++ Sbjct: 121 VAFSYGFIYVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVS 180 Query: 180 AKDHAEAFLMVETGRAAAFVMDDILLSSLAANSKAPGDYQVSSEALSVEPYGLILPKGDK 239 AKDH EAF M+++GRA AF MDD LL A ++ P D+ V E S E Y ++ K D Sbjct: 181 AKDHGEAFQMLQSGRAVAFYMDDALLYGERAKARQPHDWVVVGEPQSREIYSCMVRKDDP 240 Query: 240 EFKTVVDDALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTDSYDP 298 +F +V++ L +Y+ +I+ IY +WFQ PIPPKG+NL PM+ +L+A+L PT DP Sbjct: 241 QFLALVNETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPTS--DP 297 >RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 301 Score = 258 bits (660), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 125/292 (42%), Positives = 185/292 (63%), Gaps = 3/292 (1%) Query: 4 LKLAGVLVGASVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQSYQGYSI 63 L LAG + ASVL AE G LKKI+DS T+ +GVR+SSIPFSY D K G+S Sbjct: 10 LALAGA-IAASVL--PAQAEALDGTLKKIQDSNTILIGVRESSIPFSYRDSKNQIIGFSA 66 Query: 64 DLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERWNQVAFS 123 DLC + A+++K+G L ++ +PVTS R L+ NG+ D+ C T+ + R Q AFS Sbjct: 67 DLCSRVIDAVKQKVGKPDLQVQQIPVTSQNRTALVQNGSVDLECGVTTHLKSREQQTAFS 126 Query: 124 VTEFVTANKFLSKKAANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNILAAKDH 183 T F+ A + L+ + +K DL GK+V++ +GT++ + + +N E+ + MN+++ KD+ Sbjct: 127 TTFFIAATRLLTSTHSGVKDFPDLAGKSVITNAGTTSERILRKMNDEKKMNMNVISGKDY 186 Query: 184 AEAFLMVETGRAAAFVMDDILLSSLAANSKAPGDYQVSSEALSVEPYGLILPKGDKEFKT 243 E+FL +++GR AF+MDD+LL+ ++ P D+ V+ S E YG +L K D +FK Sbjct: 187 GESFLTLQSGRVQAFMMDDVLLAGARTLAQKPADWVVTGTPQSFEAYGFMLRKDDPQFKK 246 Query: 244 VVDDALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTDS 295 +VDD LT V K +I +YAKWF+ P+PPKGVN PMS QL+A+ P D+ Sbjct: 247 LVDDTLTGVMKRGEISTLYAKWFEKPVPPKGVNFGFPMSEQLKALYTSPNDT 298 >STM0665 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sty Salmonella typhimurium LT2 Length = 308 Score = 245 bits (626), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 123/298 (41%), Positives = 181/298 (60%), Gaps = 4/298 (1%) Query: 1 MKLLKLAGVLVGASVLMSSVHAEEFT----GRLKKIKDSGTLTLGVRDSSIPFSYLDDKQ 56 M+L KL ++ + HAE+ L KI +G + +G R+SS+PFSY D++Q Sbjct: 7 MQLRKLTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ 66 Query: 57 SYQGYSIDLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQER 116 GYS D A++KKL L +K++P+TS RIPL+ NGT D C S TNN ER Sbjct: 67 KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNLER 126 Query: 117 WNQVAFSVTEFVTANKFLSKKAANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMN 176 Q AFS T FV + L+KK ++K DLKGK VV TSGT++ + LN E+ +GM Sbjct: 127 QKQAAFSDTIFVVGTRLLTKKGGDIKDFPDLKGKAVVVTSGTTSEILLHKLNEEQKMGMR 186 Query: 177 ILAAKDHAEAFLMVETGRAAAFVMDDILLSSLAANSKAPGDYQVSSEALSVEPYGLILPK 236 I++AKDH ++F +E+GRA AF+MDD LL+ A +K P ++++ + S E YG +L K Sbjct: 187 IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK 246 Query: 237 GDKEFKTVVDDALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294 D EFK ++DD + + +K + KWF++PIPPK +N+N +S +++A+ P D Sbjct: 247 NDPEFKKLMDDTIAQAQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKAPND 304