BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0198.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1339 [E] COG1126 ABC-type polar amino acid transport system, A...   127   5e-30
gltL [E] COG1126 ABC-type polar amino acid transport system, ATP...   108   2e-24
ZgltL [E] COG1126 ABC-type polar amino acid transport system, AT...   108   2e-24
ECs0691 [E] COG1126 ABC-type polar amino acid transport system, ...   108   2e-24
STM0662 [E] COG1126 ABC-type polar amino acid transport system, ...   107   5e-24

>PA1339 [E] COG1126 ABC-type polar amino acid transport system, ATPase
          component Pae Pseudomonas aeruginosa
          Length = 244

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 64/79 (81%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MI + NVSKWYG FQVLTDCST V KG+VVVVCGPSGSGKSTLIK VN LEPFQKG I V
Sbjct: 1  MISIKNVSKWYGDFQVLTDCSTEVAKGEVVVVCGPSGSGKSTLIKCVNALEPFQKGDIVV 60

Query: 61 DGVSVGDPKTNLSKSDMRL 79
          DG S+ DPKTNL K   R+
Sbjct: 61 DGTSIADPKTNLPKLRSRV 79


>gltL [E] COG1126 ABC-type polar amino acid transport system, ATPase
          component Eco Escherichia coli K12
          Length = 241

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 65/74 (87%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MI L NVSKWYG FQVLTDCST VKKG+VVVVCGPSGSGKSTLIKTVNGLEP Q+G ITV
Sbjct: 1  MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV 60

Query: 61 DGVSVGDPKTNLSK 74
          DG+ V D KT+L+K
Sbjct: 61 DGIVVNDKKTDLAK 74


>ZgltL [E] COG1126 ABC-type polar amino acid transport system, ATPase
          component EcZ Escherichia coli O157:H7 EDL933
          Length = 241

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 65/74 (87%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MI L NVSKWYG FQVLTDCST VKKG+VVVVCGPSGSGKSTLIKTVNGLEP Q+G ITV
Sbjct: 1  MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV 60

Query: 61 DGVSVGDPKTNLSK 74
          DG+ V D KT+L+K
Sbjct: 61 DGIVVNDKKTDLAK 74


>ECs0691 [E] COG1126 ABC-type polar amino acid transport system, ATPase
          component Ecs Escherichia coli O157:H7
          Length = 241

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 65/74 (87%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MI L NVSKWYG FQVLTDCST VKKG+VVVVCGPSGSGKSTLIKTVNGLEP Q+G ITV
Sbjct: 1  MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV 60

Query: 61 DGVSVGDPKTNLSK 74
          DG+ V D KT+L+K
Sbjct: 61 DGIVVNDKKTDLAK 74


>STM0662 [E] COG1126 ABC-type polar amino acid transport system, ATPase
          component Sty Salmonella typhimurium LT2
          Length = 241

 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 67/79 (84%)

Query: 1  MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60
          MI L NVSKWYG FQVLTDCST VKKG+VVVVCGPSGSGKSTLIKTVNGLEP QKG ITV
Sbjct: 1  MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQKGEITV 60

Query: 61 DGVSVGDPKTNLSKSDMRL 79
          +G+ V D KT+L+K   R+
Sbjct: 61 NGIIVNDKKTDLAKLRSRV 79