BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0183.p         (155 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso ...    67   2e-11

>RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 181

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 19  SMRSRENLQSFQASLIERMQACDHESQSSRRLAVAIGAQACLIPLSHTSEIVPLDGQSLT 78
           ++ SR+ L  +QA L  R+Q    ++     L V IG +  L+ L  T E+  LD Q   
Sbjct: 7   NLTSRQRLHEYQAMLARRLQEARAKASMDSFLGVQIGDRHWLLSLGDTGEV--LDYQPPA 64

Query: 79  PVPATRPWFLGLLNLRGNLVGIADLAALSG 108
            VP T+PW+LGL+N RG L+G+ D A  SG
Sbjct: 65  RVPLTQPWYLGLVNARGTLLGVIDFALFSG 94