BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0181.p (697 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0671 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 555 e-157 PA0411 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 328 3e-89 XF1953 [NT] COG0840 Methyl-accepting chemotaxis protein Xfa Xyle... 254 3e-67 all0927 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nos... 195 3e-49 all2162 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nos... 172 2e-42 >RSc0671 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 743 Score = 555 bits (1430), Expect = e-157, Method: Compositional matrix adjust. Identities = 330/692 (47%), Positives = 452/692 (65%), Gaps = 12/692 (1%) Query: 5 YLHRFALRTQTRILLGILALSLAGLFLFLWLGSRLYIHATLQTHIASDLVMHSQRLGKAV 64 ++ R Q R+ L L L ++ +R + +LQ IA D +MHSQRL KAV Sbjct: 61 WIERVPFVAQQRVFTVGLLAGLVALLASIYFDNRQANNGSLQIEIAGDTLMHSQRLAKAV 120 Query: 65 PNAIQGNPEAFVQLAQSRVEFNRGLLLLTSGGTYQG--NTIGLPEPAMKPALESITRLWR 122 P A+ GN AF QL +SR L L +G +G T G A+ L+ W+ Sbjct: 121 PVALLGNESAFTQLKESRARLQSNLEALKTGSADRGLSATAGGEAQAL---LDKSIEEWK 177 Query: 123 RSDLAAENILALQKELTGFGATLKRLNQLLPVMLDLSEQISMLQSQSRPTPREMNAASQL 182 RS+ +A+ +LA +K L G TL N P +L+ +EQIS ++ Q+ RE+ A+SQL Sbjct: 178 RSEKSAQAVLAQEKTLVSVGKTLNVFNASNPELLEEAEQISSMKLQTNAPAREVAASSQL 237 Query: 183 VMLTLRLGRSANEFLTSEGVNPETAFMLGKDITAFGDQLTSLRDGNEMLRLRPASDPDLR 242 VMLT RLG++ NEFL EGVNPETAF+LGKD F + L L +G+E LRL A+DP+ + Sbjct: 238 VMLTQRLGKNMNEFLAGEGVNPETAFLLGKDTNTFRETLNGLLNGSEALRLSAATDPETK 297 Query: 243 EKLDELERVFAQYQPQIAGILGHLQNFIAAKQAERLVFVENETLKRQLTELQDDYRIALK 302 L EL F Q IL +L IAAK+A++ +F +NE L+ L++LQ Y +++ Sbjct: 298 GYLQELSTRFDNVQKTTQIILENLPGLIAAKRAQQQIFNDNEKLRADLSDLQSAYSGSVR 357 Query: 303 SRSWTFWAMLVTMVMALLSAIGIALVQLQSSRNNAAAAEARRQQAELQRQLAQQEEEKAM 362 SR T A++++ ++ + G+A + L+ SR A AEAR+++AE +R + + Sbjct: 358 SRPLTLGAVVLSAILTVACLAGLAALYLRDSRVRAMEAEARQREAEERRMVEK------- 410 Query: 363 RVNHLTQTAILRLMTELQKVADGDLTVRTTVSDDVTGAIADSVNHTVEALRALVEQVTQM 422 R N TQ AILRLM ELQ +ADGDLT + TVS+D+TGAIADSVN+TVE LR LV +V Q Sbjct: 411 RNNDATQAAILRLMNELQDIADGDLTKQATVSEDITGAIADSVNYTVEELRELVGRVQQT 470 Query: 423 ASKVSQSSEQVRGTTTELGAAARAQARRIQRIAQAMLEMSMQITGISVSADESADVARHA 482 A +V+Q+S V+ T+ +L A+ Q+R+I++ Q+++EM+ +IT +S A ESA+VAR + Sbjct: 471 AEQVTQASSAVQTTSDKLVLASEEQSRQIRQTGQSVVEMADRITQVSRGAAESANVARAS 530 Query: 483 VLAAERGERAVENAIKAMNGIREQIQETSGRITRLGESSQMIGEITELISDITERTNVLA 542 + AAE+G+ AV+NAI MN IR+QIQ+TS RI RLGESSQ IGEI ELISDITE+TNVLA Sbjct: 531 LAAAEQGQVAVQNAITGMNDIRDQIQDTSKRIKRLGESSQEIGEIVELISDITEQTNVLA 590 Query: 543 LNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMDKST 602 LNAAIQAASAGEAGRGFSVVAEEVQ LAERS+ A ++IGAL+R IQ DT+D V AM++ST Sbjct: 591 LNAAIQAASAGEAGRGFSVVAEEVQRLAERSAEAAKQIGALIRTIQTDTQDAVHAMERST 650 Query: 603 TGVTEGAVLSDAAGSALADIRSVSEKLAELIQGMAGSTREQAVSANGVAQQIQGILTEND 662 GV EGA LSD AG+AL +I VS +LAELI+ ++ +T +A A+ VAQ I+ IL + Sbjct: 651 AGVVEGAKLSDNAGTALVEIGRVSRQLAELIESISQTTSHEATLASDVAQNIEQILQMTE 710 Query: 663 IIEQSREQVSALYEELWGAARQLENSVSRFRV 694 Q + +L A +L +SV+RFR+ Sbjct: 711 QTSTGSRQTAQSVRQLTQLAEELRDSVARFRI 742 >PA0411 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 682 Score = 328 bits (841), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 236/683 (34%), Positives = 379/683 (55%), Gaps = 35/683 (5%) Query: 18 LLGILALSLAGLFL-FLWLGSRLYIHATLQTHIASDLVMHSQRLGKAVPNAIQGNPEAFV 76 L +L +S+ LF F +L ++ H A +L + SQR+ K A G EAF Sbjct: 22 LFIVLIVSIVLLFANFAYLNTQSNHDKQYIGH-AGELRVLSQRIAKNATEAAAGKGEAFK 80 Query: 77 QLAQSRVEFNRGLLLLTSGGTYQGNTIGLPEP-AMKPALESITRLWRRSDLAAENILALQ 135 L +R +F + +L +G +T P P A+KP ++ + + W A++ILA + Sbjct: 81 LLKDARNDFEKRWNILVNGDE---STSLPPSPEAVKPQMDVVQQDWDGLRKNADSILASE 137 Query: 136 KELTGFGATLKRLNQLLP-VMLDLSEQISMLQSQSRPTPREMNAASQLVMLTLRLGRSAN 194 + + L + +P + ++ E + +L P ++ A + +L R+ S N Sbjct: 138 QTVLSLHQVASTLAETIPQLQVEYEEVVDILLENGAPAD-QVAVAQRQSLLAERILGSVN 196 Query: 195 EFLTSEGVNPETAFMLGKDITAFGDQLTSLRDGNEMLRLRPASDPDLREKLDELERVFAQ 254 + L + + + A G+D + FG L +++GN + + ++ + ++L+E+ +F Sbjct: 197 KVLAGDENSVQAADSFGRDASLFGRVLKGMQEGNAAMSISKVTNAEAVDRLNEIAELFEF 256 Query: 255 YQPQIAGILGHLQNFIAAKQAERLVFVENETLKRQLTELQDDYRIALKSRSWTFWAMLVT 314 + IL + ++A +F ++TL + ++L D + RS +A Sbjct: 257 VSGSVDEILETSPDLFQVREAANNIFSVSQTLLDKASQLADGFENLAGGRSINLFAGYAL 316 Query: 315 MVMALLSAIGIALVQLQSSRNNAAAAEARRQQAELQRQLAQQEEEKAMRVNHLTQTAILR 374 +AL S I I LV ++ E R+LA+ E+ N Q AILR Sbjct: 317 GALALASIILIGLVMVR----------------ETNRRLAETAEK-----NDRNQAAILR 355 Query: 375 LMTELQKVADGDLTVRTTVSDDVTGAIADSVNHTVEALRALVEQVTQMASKVSQSSEQVR 434 L+ E+ +ADGDLTV TV++D TGAIADS+N++++ LR LVE + Q A +V+ ++++ + Sbjct: 356 LLDEIADLADGDLTVAATVTEDFTGAIADSINYSIDQLRELVETINQTAVQVAAAAQETQ 415 Query: 435 GTTTELGAAARAQARRIQRIAQAMLEMSMQITGISVSADESADVARHAVLAAERGERAVE 494 T L A+ QA+ I + A+ EM++ I +S +A ES+ VA +V A +G V Sbjct: 416 STAMHLAEASEHQAQEIAGASAAINEMAVSIDQVSANASESSAVAERSVAIANKGNEVVH 475 Query: 495 NAIKAMNGIREQIQETSGRITRLGESSQMIGEITELISDITERTNVLALNAAIQAASAGE 554 N I M+ IREQIQ+TS RI RLGESSQ IG+I LI+DI ++TN+LALNAAIQA+ AG+ Sbjct: 476 NTITGMDNIREQIQDTSKRIKRLGESSQEIGDIVSLINDIADQTNILALNAAIQASMAGD 535 Query: 555 AGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMDKSTTGVTEGAVLSDA 614 AGRGF+VVA+EVQ LAERSSAAT++I ALV+ IQ DT + V++M+++T+ V GA L+ Sbjct: 536 AGRGFAVVADEVQRLAERSSAATKQIEALVKTIQTDTNEAVISMEQTTSEVVRGARLAQD 595 Query: 615 AGSALADIRSVSEKLAELIQGMAGSTREQAVSANGVAQQIQGILTENDIIEQSREQVSAL 674 AG AL +I VS+ LA LIQ ++ + R+QA SA ++ + I +I Q+ +A Sbjct: 596 AGVALEEIEKVSKTLAALIQNISNAARQQASSAGHISNTMNVI---QEITSQTSAGTTAT 652 Query: 675 YEELWGAAR---QLENSVSRFRV 694 + A+ ++ NSVS F++ Sbjct: 653 ARSIGNLAKMASEMRNSVSGFKL 675 >XF1953 [NT] COG0840 Methyl-accepting chemotaxis protein Xfa Xylella fastidiosa 9a5c Length = 693 Score = 254 bits (650), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 201/634 (31%), Positives = 328/634 (51%), Gaps = 41/634 (6%) Query: 15 TRILLGILALSL----AGLFLFLWLGSRLYIHATLQTHIASDLVMHSQRLGKAVPNAIQG 70 T +G+ LS+ A + + W G RL A +A +L + SQ+L A+ G Sbjct: 31 TNFWIGLFLLSMIVFSANIGVATWQGRRL---AGASADVA-NLQVLSQQLVSQGREAVAG 86 Query: 71 NPEAFVQLAQSRVEFNRGLLLLTSGGTYQGNTIGLPEPAMKPALESITRLWRRSDLAAEN 130 + +AF + + + + L + Y E ++ AL + W A+ Sbjct: 87 DSKAFSNFKEIKSKIEDTVKKLEA--RYNN------ESSVSDALFQLKNTWGPLSKNAKQ 138 Query: 131 ILALQKELTGFGATLKRLNQLLP-VMLDLSEQISMLQSQSRPTPREMNAASQLVMLTLRL 189 ++ + + R +P + L+E + + + P P + Q V++ + Sbjct: 139 LIDSESATLVLASNADRFVSNVPQLQAQLNEVVRAMTASGAP-PSQFYNTLQQVVVAGTM 197 Query: 190 GRSANEFLTSEGVNPETAFMLGKDITAFGDQLTSLRDGNEMLRLRPASDPDLREKLDELE 249 R E TS L +D F L LR+GN+ L + P + L + + Sbjct: 198 ARRVAEMRTSGVGAAAAGDALARDSVMFTRMLEGLRNGNQELGISPVRNDATLSALTKSQ 257 Query: 250 RVFAQYQPQIAGILGHLQNFIAAKQAERLVFVENETLKRQLTELQDDYRI-----ALKSR 304 ++ + + IL AA+ + + + L +L + + +R Sbjct: 258 SLWTTMKKDVDTILATSHQLFAAQSSVDALVNGSGKLLEDSNKLFNAFSTFGVGSVRDTR 317 Query: 305 SW-TFWAMLVTMVMALLSAIGIALVQLQSSRNNAAAAEARRQQAELQRQLAQQEEEKAMR 363 + FW ++ +++L+S +G+A + R + + QR AQ E Sbjct: 318 IFPNFWLTVIFGLLSLVSIVGLAWSTV-----------IYRSREQEQRYQAQVE------ 360 Query: 364 VNHLTQTAILRLMTELQKVADGDLTVRTTVSDDVTGAIADSVNHTVEALRALVEQVTQMA 423 N Q AI+RL+ E+ + +GDLTV+ +V++++TGAIAD++N V+ LR LV + + Sbjct: 361 FNSRNQQAIMRLLEEIISIGEGDLTVKASVTEEMTGAIADAINCAVDELRQLVATINTTS 420 Query: 424 SKVSQSSEQVRGTTTELGAAARAQARRIQRIAQAMLEMSMQITGISVSADESADVARHAV 483 +KV+ S+ + + T L AA QA +I +++ + E++ I +S ++ ESA+VA+ +V Sbjct: 421 AKVAVSAHETQTTAMRLAEAAGHQANQITTVSERISEIAASIEQVSRNSAESAEVAQRSV 480 Query: 484 LAAERGERAVENAIKAMNGIREQIQETSGRITRLGESSQMIGEITELISDITERTNVLAL 543 + A G V I+ M+ IR+QIQETS RI RLGESSQ IG I ELI+DI+E+TN+LAL Sbjct: 481 VIAAEGAGVVRETIQGMDQIRDQIQETSKRIKRLGESSQEIGSIVELINDISEQTNILAL 540 Query: 544 NAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMDKSTT 603 NAA+QAASAGEAGRGF++VA+EVQ LAER+S+ATR I +LVR IQ DT + V +M+++T Sbjct: 541 NAAVQAASAGEAGRGFAIVADEVQRLAERTSSATRRIESLVRAIQVDTNEAVSSMEQTTA 600 Query: 604 GVTEGAVLSDAAGSALADIRSVSEKLAELIQGMA 637 V GA L++ AG+AL +I VS L LI+ ++ Sbjct: 601 EVVSGARLAEDAGTALIEIEHVSNTLNHLIKNIS 634 >all0927 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nostoc sp. PCC 7120 Length = 980 Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 206/347 (59%), Gaps = 5/347 (1%) Query: 348 ELQRQLAQQEEEKAMRVNHLTQTAILRLMTELQKVADGDLTVRTTVSDDVTGAIADSVNH 407 E QR+ +QEE K Q ++RL+ +++ A GDLTV+ V+ DV GA+AD+ N Sbjct: 633 EAQRKADEQEEAK-----ENLQRQVIRLLDDVEGAARGDLTVQAEVTADVLGAVADAFNL 687 Query: 408 TVEALRALVEQVTQMASKVSQSSEQVRGTTTELGAAARAQARRIQRIAQAMLEMSMQITG 467 T++ LR +V+QV A +V++ + L + A QA + ++ M+ I Sbjct: 688 TIQNLRDIVQQVKVAAKEVTKGATNSETFARALSSDALRQAEELGVTLNSVQVMTDSIQR 747 Query: 468 ISVSADESADVARHAVLAAERGERAVENAIKAMNGIREQIQETSGRITRLGESSQMIGEI 527 ++ +A E+ VAR A A +G AVEN + + IRE + ET+ ++ RL ESSQ I +I Sbjct: 748 VAEAAREAEKVARDASTIALKGGEAVENTVAGILEIRETVAETTRKVKRLAESSQEISKI 807 Query: 528 TELISDITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMI 587 LIS I RTN+LALNA+I+AA AGEAGRGF++VA+EV+ LA++S+ + +EI +V I Sbjct: 808 VALISQIASRTNLLALNASIEAARAGEAGRGFAIVADEVRQLADKSAKSLKEIEQIVMQI 867 Query: 588 QADTRDVVVAMDKSTTGVTEGAVLSDAAGSALADIRSVSEKLAELIQGMAGSTREQAVSA 647 Q++T V+ AM++ T V +G L++ A +L +I V+ ++ L++ + T EQ ++ Sbjct: 868 QSETGSVMTAMEEGTQQVIKGTKLAEEAKRSLENIIQVANRIDILVRSITSDTVEQTETS 927 Query: 648 NGVAQQIQGILTENDIIEQSREQVSALYEELWGAARQLENSVSRFRV 694 VAQ +Q + Q ++VS + L G +R L +SV RFRV Sbjct: 928 RAVAQVMQSVELTAQETSQEAQRVSGALQNLVGVSRDLISSVERFRV 974 >all2162 [NT] COG0840 Methyl-accepting chemotaxis protein Nos Nostoc sp. PCC 7120 Length = 752 Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/319 (35%), Positives = 181/319 (56%) Query: 377 TELQKVADGDLTVRTTVSDDVTGAIADSVNHTVEALRALVEQVTQMASKVSQSSEQVRGT 436 + ++ VA GDLTVR V+ G +AD N VE LR +V QV Q A +++ + G Sbjct: 434 SNVEGVAKGDLTVRADVTAGEIGTVADFFNSIVENLRDIVTQVKQAAGQLNTAIGSNEGA 493 Query: 437 TTELGAAARAQARRIQRIAQAMLEMSMQITGISVSADESADVARHAVLAAERGERAVENA 496 +L A QA I R A+ +M+ + ++ SA ++A VA HA A + +A++ Sbjct: 494 IRQLAEEALTQATEINRTLDAVDKMTHSMQAVADSAQQAATVANHAAFTATKSGQAMDLT 553 Query: 497 IKAMNGIREQIQETSGRITRLGESSQMIGEITELISDITERTNVLALNAAIQAASAGEAG 556 ++ + +R + ET+ ++ RLGESSQ I + +I+ I +TN+LA+NA I+AA AGE G Sbjct: 554 VQNILSLRTTVGETAKKVKRLGESSQQISRVVSIINQIATQTNLLAINAGIEAARAGEEG 613 Query: 557 RGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMDKSTTGVTEGAVLSDAAG 616 GF VVAEE+ LA RS+ AT+EI +V IQ +T +VV AM+ TT V EG + + A Sbjct: 614 EGFGVVAEEIGELAARSAVATQEIEQIVENIQRETNEVVKAMEVGTTQVVEGTRIVEEAK 673 Query: 617 SALADIRSVSEKLAELIQGMAGSTREQAVSANGVAQQIQGILTENDIIEQSREQVSALYE 676 +L I VS ++ LIQ ++ +T Q ++ V + +Q I + + S V+ + Sbjct: 674 QSLGQILDVSRQIDSLIQSISTATVSQVETSQTVNRLMQDIASVSQRSSDSSRLVAQSLK 733 Query: 677 ELWGAARQLENSVSRFRVT 695 + + QL+ +V F+V+ Sbjct: 734 QTVEISHQLQKTVGTFKVS 752