BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0096.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0413_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa                    78   4e-15
all0929 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                        78   6e-15
slr1042 [T] COG0784 FOG Syn Synechocystis                              77   1e-14
alr3671_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                      76   2e-14
CC2463 [T] COG0784 FOG Ccr Caulobacter vibrioides                      76   2e-14

>PA0413_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 134

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 9   VLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGMEL 68
           V+VV+D    R +   +L   G++V+ A DGV+AIA +Q   P ++L D+ MPRMDG E+
Sbjct: 15  VMVVDDSVTVRKVTTRLLERNGMNVLTAKDGVDAIAQLQEHRPDILLLDIEMPRMDGFEV 74

Query: 69  ARYIKSDERFGHIPVALISANLPAAN---ARVPEISAFLLKPCSVDHLLTTVTQLL 121
           A  ++ DER G++P+ +I++     +   A    ++ +L KP     LL  +  L+
Sbjct: 75  ATLVRHDERLGNLPIIMITSRTGEKHRERALGIGVNQYLGKPYQETELLEAIQSLV 130


>all0929 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 121

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 8   TVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGME 67
           TVL+VED    R+++ ++L   GL+V  A+DG+EA+  ++ + P LV+ D+ MP+M+G E
Sbjct: 3   TVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMNGYE 62

Query: 68  LARYIKSDERFGHIPVALISAN---LPAANARVPEISAFLLKPCSVDHLLTTVTQLLR 122
           + R +KSD +  ++PV + S+                A++ KP     L+ TV QLLR
Sbjct: 63  VCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120


>slr1042 [T] COG0784 FOG Syn Synechocystis
          Length = 147

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 9   VLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGMEL 68
           VL+VED    R+++  IL   G  V  A DGVEA+  +Q+ +P LV+ D+ MPRM+G E+
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 69  ARYIKSDERFGHIPVALISAN---LPAANARVPEISAFLLKPCSVDHLLTTVTQLLR 122
            R IKSD +  ++PV + S+                A++ KP     L+ T+ QLLR
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>alr3671_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 154

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 3/122 (2%)

Query: 4   SKQKTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRM 63
           S+   +LVV+D PD+  L+  IL  +G +V  A +G+ A+A +Q+    LVL DL MP M
Sbjct: 20  SQSGKILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGM 79

Query: 64  DGMELARYIKSDERF-GHIPVALISANLPAANARVPEISA--FLLKPCSVDHLLTTVTQL 120
           DG E+ R ++ + +   +IP+ LI+A+     A   ++ A  F+ KP +VD LL  V  L
Sbjct: 80  DGYEVTRRVRGEMKLPQYIPILLITAHDAPNVAHGLDLGADDFIRKPVTVDELLARVRSL 139

Query: 121 LR 122
           LR
Sbjct: 140 LR 141


>CC2463 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 130

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 7   KTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAPSLVLTDLRMPRMDGM 66
           K VL+VED+  +  L  ++L  +G   +   +G+ A+++ +   P L+L D+++P + G+
Sbjct: 8   KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGL 67

Query: 67  ELARYIKSDERFGHIPVALISA-NLPAANARVPE--ISAFLLKPCSVDHLLTTVTQLL 121
           E+ +++K D+   HIPV  ++A  +     R+ E    A++ KP SV H L T+ +LL
Sbjct: 68  EVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 125