BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0094.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5370 [GEPR] COG0477 Permeases of the major facilitator superfa...   208   3e-54
YPO0465 [GEPR] COG0477 Permeases of the major facilitator superf...   198   4e-51
AGc3904 [GEPR] COG0477 Permeases of the major facilitator superf...   185   3e-47
BMEI0353 [GEPR] COG0477 Permeases of the major facilitator super...   183   1e-46
Cj1588c [GEPR] COG0477 Permeases of the major facilitator superf...   153   1e-37

>PA5370 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 438

 Score =  208 bits (530), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/132 (74%), Positives = 115/132 (87%)

Query: 9   GALNESQHRPLSSSDYKTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADMQEWLRMLQ 68
            A      RPL+ SDYKTL LSALGG LEFYDF+I+VFFA VVGKLFFPADM EWLR LQ
Sbjct: 5   NAPEAPAQRPLTRSDYKTLSLSALGGALEFYDFIIFVFFATVVGKLFFPADMPEWLRQLQ 64

Query: 69  TFGIFAAGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAP 128
           TFG+FAAGYLARP+GG+I+AH+GD++GRKRMFTLSIF+MAVPTL++GLLPTYA IG+ AP
Sbjct: 65  TFGLFAAGYLARPLGGVIMAHFGDLLGRKRMFTLSIFMMAVPTLIMGLLPTYAQIGIWAP 124

Query: 129 ILLLLMRTLQGA 140
           + LLL+R +QGA
Sbjct: 125 LALLLLRVIQGA 136


>YPO0465 [GEPR] COG0477 Permeases of the major facilitator superfamily Ype
           Yersinia pestis
          Length = 462

 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 114/129 (88%)

Query: 12  NESQHRPLSSSDYKTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADMQEWLRMLQTFG 71
             + +R L+  DYKTL L+ALGG LEFYDF+I+VFFAAV+G LFFPADM EWLR +QTFG
Sbjct: 25  QHNHNRRLNKQDYKTLTLAALGGALEFYDFIIFVFFAAVIGDLFFPADMPEWLRQVQTFG 84

Query: 72  IFAAGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILL 131
           IFAAGYLARP+GGII+AH+GD++GRK+MFTLSI LMA+PTL IG+LPTYA+IG+ AP+LL
Sbjct: 85  IFAAGYLARPLGGIIMAHFGDLVGRKKMFTLSILLMALPTLAIGMLPTYATIGITAPLLL 144

Query: 132 LLMRTLQGA 140
           LLMR LQGA
Sbjct: 145 LLMRVLQGA 153


>AGc3904 [GEPR] COG0477 Permeases of the major facilitator superfamily Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 443

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 107/124 (86%)

Query: 17  RPLSSSDYKTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADMQEWLRMLQTFGIFAAG 76
           RPL+S D++TLGLSALGG LEFYDF+I+VFFA V+G LFFP +M +WL M+QTFGIFAAG
Sbjct: 11  RPLNSQDFRTLGLSALGGALEFYDFIIFVFFATVIGHLFFPPEMPDWLVMIQTFGIFAAG 70

Query: 77  YLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLLMRT 136
           YL RP+GGI++AHYGD  GRKR+F  SI LMA+ TL + L+PTYA+IGVAAPILL+++R 
Sbjct: 71  YLVRPLGGIVLAHYGDRYGRKRVFAFSILLMALSTLGMALMPTYATIGVAAPILLIILRM 130

Query: 137 LQGA 140
           LQGA
Sbjct: 131 LQGA 134


>BMEI0353 [GEPR] COG0477 Permeases of the major facilitator superfamily Bme
           Brucella melitensis
          Length = 503

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 106/127 (83%)

Query: 14  SQHRPLSSSDYKTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADMQEWLRMLQTFGIF 73
           +  RPL+  D++TLGLSALGG LEFYDF+I+VFFA+V+G LFFP DM +WL ++QTFGIF
Sbjct: 63  NSPRPLNRQDFRTLGLSALGGALEFYDFIIFVFFASVIGHLFFPPDMPDWLVLIQTFGIF 122

Query: 74  AAGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLL 133
           AAGYL RPVGGI++AH+GD  GRKR+F  S+FLM++ TL +  LPTYA++GV APILL++
Sbjct: 123 AAGYLVRPVGGIVLAHFGDKFGRKRVFAFSVFLMSISTLAMAALPTYATLGVGAPILLIV 182

Query: 134 MRTLQGA 140
            R LQGA
Sbjct: 183 FRMLQGA 189


>Cj1588c [GEPR] COG0477 Permeases of the major facilitator superfamily Cje
           Campylobacter jejuni
          Length = 431

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 92/125 (73%)

Query: 15  QHRPLSSSDYKTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADMQEWLRMLQTFGIFA 74
           +     + + K LGLS+LGGTLEFYDF+I+VFFA  +  +FFP DM E+  +L T+G FA
Sbjct: 2   RKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFPKDMSEFWALLNTYGAFA 61

Query: 75  AGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLLM 134
           AGYLARP+GGI++AH+GD  GRK MF LSI LM +PT V+  +P Y ++G  AP+LL+L+
Sbjct: 62  AGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLAFIPGYETLGFLAPVLLILI 121

Query: 135 RTLQG 139
           R  QG
Sbjct: 122 RIFQG 126