BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0083.p         (240 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2498 [T] COG2199 FOG Dra Deinococcus radiodurans                    127   2e-29
STM1987_2 [T] COG2199 FOG Sty Salmonella typhimurium LT2              120   3e-27
AGpA538 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58...   115   8e-26
ECs2694_2 [T] COG2199 FOG Ecs Escherichia coli O157:H7                115   1e-25
yedQ_2 [T] COG2199 FOG Eco Escherichia coli K12                       115   1e-25

>DR2498 [T] COG2199 FOG Dra Deinococcus radiodurans
          Length = 356

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 98/167 (58%), Gaps = 9/167 (5%)

Query: 71  QQLSDELDYKARHDNLTGALNRGAVFERAHQVLQ-----KSPMSLVVLDIDFFKRINDEF 125
           +Q S EL   AR D LTG   R A+     + L       SP+S+++ DID FK++ND  
Sbjct: 193 EQTSGELQ-AARLDALTGVAGRAALESELQRALDTARRTNSPLSVILADIDHFKQVNDVH 251

Query: 126 GHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQAIAGE 185
           GH  GD V+R    RLR  V G G++GR GGEEF  +LPG+A + A+ LA R+RQA++  
Sbjct: 252 GHGAGDDVLRAFAKRLRRNVGGAGMVGRWGGEEFMAVLPGVARDDALALAERLRQAVSDT 311

Query: 186 RFGCLPARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRV 232
               L   PVT+SFGVA      D  Q ++RAD+ LY AK  GRN V
Sbjct: 312 EIAGL---PVTASFGVAALRPDDDLNQLFSRADERLYDAKNGGRNTV 355


>STM1987_2 [T] COG2199 FOG Sty Salmonella typhimurium LT2
          Length = 180

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 99/167 (59%), Gaps = 9/167 (5%)

Query: 75  DELDYKARHDNLTGALNRGAVFERAHQVLQK-----SPMSLVVLDIDFFKRINDEFGHPT 129
           + L ++A HD LT   NRGA+FE+A ++ ++      P S++ LD+D+FK +ND FGH  
Sbjct: 2   NSLQWQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQA 61

Query: 130 GDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQAIAGERFGC 189
           GD V+      + +T+    + GRVGGEEF I+LPG     A+ +A RIRQ I  +    
Sbjct: 62  GDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERIRQRINDKEILV 121

Query: 190 LPARP--VTSSFGVAWAT--AGSDFEQAYARADQALYQAKRSGRNRV 232
             +    +++S G++ A      DFEQ  + AD+ LY AK+SGRNR+
Sbjct: 122 TKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNRI 168


>AGpA538 [T] COG2199 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 411

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 93/163 (57%), Gaps = 5/163 (3%)

Query: 81  ARHDNLTGALNR---GAVFERAH-QVLQKSPMSLVVLDIDFFKRINDEFGHPTGDAVIRE 136
           A  D LT  LNR    AV   A  + L+K   ++++ DID FK IND FGH  GD VI+ 
Sbjct: 217 ANLDPLTNLLNRRGLDAVLASAQGERLKKPATAIILADIDHFKAINDRFGHSFGDLVIKR 276

Query: 137 LVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQAIAGERFGC-LPARPV 195
             A +++     G + R+GGEEF +LLP   L+ A+  A ++R++ A ER+ C       
Sbjct: 277 FGALVQSHTTTQGCVARLGGEEFAVLLPDTCLDDAIAAAEKMRRSFAAERWPCDRKESEF 336

Query: 196 TSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRVESEETV 238
           T+SFGVA    G     A+ RADQ LY AKR GRNRV + + V
Sbjct: 337 TASFGVALVEDGEALSTAFERADQFLYAAKRMGRNRVAAAKHV 379


>ECs2694_2 [T] COG2199 FOG Ecs Escherichia coli O157:H7
          Length = 178

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 13/171 (7%)

Query: 73  LSDELDYKARHDNLTGALNRGAVFERAHQV-----LQKSPMSLVVLDIDFFKRINDEFGH 127
           L   L ++A HD LT   NRGA+FE+A  +       + P S++ +D+D FK IND FGH
Sbjct: 4   LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGH 63

Query: 128 PTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQAIAGERF 187
             GD V+      + +++    V GRVGGEEF ++LPG +L  A  +A RIR  +  +  
Sbjct: 64  QAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEM 123

Query: 188 GCLPARPVT----SSFGVAWA--TAGSDFEQAYARADQALYQAKRSGRNRV 232
             L A+  T    +S GV+ +  T   DFEQ  + AD+ LY AK++GRNRV
Sbjct: 124 --LIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 172


>yedQ_2 [T] COG2199 FOG Eco Escherichia coli K12
          Length = 179

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 98/171 (57%), Gaps = 13/171 (7%)

Query: 73  LSDELDYKARHDNLTGALNRGAVFERAHQV-----LQKSPMSLVVLDIDFFKRINDEFGH 127
           L   L ++A HD LT   NRGA+FE+A  +       + P S++ +D+D FK IND FGH
Sbjct: 5   LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGH 64

Query: 128 PTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLAGRIRQAIAGERF 187
             GD V+      + +++    V GRVGGEEF ++LPG +L  A  +A RIR  +  +  
Sbjct: 65  QAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEM 124

Query: 188 GCLPARPVT----SSFGVAWA--TAGSDFEQAYARADQALYQAKRSGRNRV 232
             L A+  T    +S GV+ +  T   DFEQ  + AD+ LY AK++GRNRV
Sbjct: 125 --LIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 173