BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0080.p         (533 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4112_3 [T] COG0642 Signal transduction histidine kinase Pae Ps...   161   3e-39
VC1349_3 [T] COG0642 Signal transduction histidine kinase Vch Vi...   150   8e-36
PA3462_2 [T] COG0642 Signal transduction histidine kinase Pae Ps...   144   6e-34
mlr3786_1 [T] COG0642 Signal transduction histidine kinase Mlo M...   133   1e-30
VC2453_1 [T] COG0642 Signal transduction histidine kinase Vch Vi...   131   4e-30

>PA4112_3 [T] COG0642 Signal transduction histidine kinase Pae Pseudomonas
           aeruginosa
          Length = 242

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 108/162 (66%), Gaps = 15/162 (9%)

Query: 1   VRLHIALDPQLPRRLVGDAHRLQQVLVNLAGNALKFTHQGHIDVHFTRLDPLPGRTVALR 60
           V +   +DP+LP  +VGD  RLQQ+L+NLAGNALKFT +GH+ V   RL       V LR
Sbjct: 93  VEVIFDIDPELPSAVVGDRLRLQQILINLAGNALKFTARGHVLVSLRRLAH-DAHLVRLR 151

Query: 61  VEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEP 120
           V V+DTGIGI+A++   IF+ FTQAEAST+RR+GGTGLGL I K LV LMGG+L+V S P
Sbjct: 152 VLVADTGIGISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAP 211

Query: 121 GRGSRFWFDLQLAVDDDSVLGPAAADDAARPQPLQAASHTAG 162
           G GSRFWFDL L              D A  QPL+AA   AG
Sbjct: 212 GSGSRFWFDLDL--------------DVAHDQPLRAACPGAG 239


>VC1349_3 [T] COG0642 Signal transduction histidine kinase Vch Vibrio
           cholerae
          Length = 260

 Score =  150 bits (378), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/136 (55%), Positives = 95/136 (69%), Gaps = 1/136 (0%)

Query: 1   VRLHIALDPQLPRRLVGDAHRLQQVLVNLAGNALKFTHQGHIDVHFTRLDPLPGRTVALR 60
           +   + +DP +P  L+GD  RL QV+VNL GNA+KFT QG I V   R+  L  + V LR
Sbjct: 112 IEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEI-VLSARVSQLNEQQVTLR 170

Query: 61  VEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEP 120
             V DTGIGIA D+LDD+FDAF+QA+ S TR+YGGTGLGL+ISK LV LMGGQ+ V SE 
Sbjct: 171 FAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEE 230

Query: 121 GRGSRFWFDLQLAVDD 136
           G+GS F F +   + D
Sbjct: 231 GKGSTFEFSVVCGLQD 246


>PA3462_2 [T] COG0642 Signal transduction histidine kinase Pae Pseudomonas
           aeruginosa
          Length = 385

 Score =  144 bits (362), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 98/133 (73%), Gaps = 1/133 (0%)

Query: 1   VRLHIALDPQLPRRLVGDAHRLQQVLVNLAGNALKFTHQGHIDVHFTRLDPLPGRTVALR 60
           + LH+ LD  +PRRL GD  RL+QVL+NL  NALKFT +GH+ V   R     GR   L 
Sbjct: 97  LHLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLL- 155

Query: 61  VEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEP 120
             VSD+GIGI+A     +F++F+QA++STTRRYGG+GLGLAIS+ LV +MGG+++VSSEP
Sbjct: 156 YSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEP 215

Query: 121 GRGSRFWFDLQLA 133
           G+G+RF  DL L+
Sbjct: 216 GKGTRFSVDLPLS 228


>mlr3786_1 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium
           loti
          Length = 478

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 92/136 (67%), Gaps = 10/136 (7%)

Query: 3   LHIALDPQLPRRLVGDAHRLQQVLVNLAGNALKFTHQGHIDVHFTRLDPLPGRTVA---- 58
           L + +DP+LP  +VGDA R +Q++ NL GNA+KFT +GH+      L  + G TV     
Sbjct: 336 LIVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKFTEKGHV------LIDVGGETVNDVVQ 389

Query: 59  LRVEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSS 118
           LR+ V DTGIGI A++L ++F+ F Q + S+TRR+ GTGLGLAI+  LV LM G++ V S
Sbjct: 390 LRLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVES 449

Query: 119 EPGRGSRFWFDLQLAV 134
           E GRGS FWF + L V
Sbjct: 450 EIGRGSVFWFAVPLPV 465


>VC2453_1 [T] COG0642 Signal transduction histidine kinase Vch Vibrio
           cholerae
          Length = 516

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 92/132 (69%), Gaps = 1/132 (0%)

Query: 1   VRLHIALDPQLPRRLVGDAHRLQQVLVNLAGNALKFTHQGHIDVHFTRLDPLPGRTVALR 60
           + + + +DP++PR +VGD  R+QQVL NL GN++KFT +G+IDV    +  L    + L+
Sbjct: 386 LEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVS-VEMRALRDDVIDLQ 444

Query: 61  VEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEP 120
             V DTGIGI+  +   +F AF+QA+AS +RRYGGTGLGL I++ LV  MGG++ ++S  
Sbjct: 445 FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRL 504

Query: 121 GRGSRFWFDLQL 132
            +GS FWF L+L
Sbjct: 505 HQGSTFWFTLRL 516