BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0056.p         (157 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0360 Non COG                                                       103   2e-22
Z4864 [I] COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein...    79   3e-15
ECs4339 [I] COG4706 Predicted 3-hydroxylacyl-(acyl carrier prote...    79   3e-15
NMB1701 [I] COG4706 Predicted 3-hydroxylacyl-(acyl carrier prote...    74   9e-14

>RSp0360 Non COG
          Length = 158

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 3/153 (1%)

Query: 6   PTIPPIEQLLPHAAPMILIDRVVAVNEEQLQAELEIRPDSLFNNGSG-VGAWVGIEYMAQ 64
           P  P IE +LPH   M+L+  V   ++E L+A   + P + + +  G + AW GIE MAQ
Sbjct: 7   PPPPRIEDILPHRGSMLLLAHVDTWDDETLRASAHVDPTAWYADPEGAMPAWFGIELMAQ 66

Query: 65  SIAAWAGYQELRQGGRAKIGFLLGARRYSCSVPEFVSGLRLGVSVQLLLQAENGLGSFDC 124
           +IAA  G   +R+G  A+ G LLG+R+Y    P F     L ++VQ +L++  G G++ C
Sbjct: 67  AIAAHVGLLSMREGNPARPGVLLGSRKYEAHAPAFAPAQPLSIAVQEVLRSTEGHGAYAC 126

Query: 125 RITDLATQQELAQATVSVFQPHDATHYLQEGMA 157
            I   A  ++LAQA + V+QP D   +++   A
Sbjct: 127 TIA--AGGRDLAQAVIKVYQPTDFQAFIEGSFA 157


>Z4864 [I] COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein)
           dehydratase EcZ Escherichia coli O157:H7 EDL933
          Length = 154

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 13/148 (8%)

Query: 15  LPHAAPMILIDRVVAVNEEQLQAELEIRPDSL----FNNGSGVGAWVGIEYMAQSIAAWA 70
           LPH APM+L++ VV+V+++     + + P  +     +    +  W  +E MAQ++  W+
Sbjct: 11  LPHDAPMLLLEDVVSVSDDSAVCRVTVSPSGVLAPFLDPDGNLPGWFTLELMAQTVGVWS 70

Query: 71  GYQELRQGGRA-KIGFLLGARRYSCSVPEFVSGLRLGVSVQLLLQAENGLGSFDCRITDL 129
           G+   +QG  + ++G +LGAR   C+     +G  L ++V+LL+Q ++  GSF+C I D 
Sbjct: 71  GWHRHQQGKNSIELGMILGARELLCTTGILPAGQTLTITVKLLMQ-DDRFGSFECSINDG 129

Query: 130 ATQQELAQATVSVFQP--HDATHYLQEG 155
                 A   ++ FQP   + T   Q+G
Sbjct: 130 E-----ATGRINTFQPTAEELTTLFQQG 152


>ECs4339 [I] COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein)
           dehydratase Ecs Escherichia coli O157:H7
          Length = 154

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 13/148 (8%)

Query: 15  LPHAAPMILIDRVVAVNEEQLQAELEIRPDSL----FNNGSGVGAWVGIEYMAQSIAAWA 70
           LPH APM+L++ VV+V+++     + + P  +     +    +  W  +E MAQ++  W+
Sbjct: 11  LPHDAPMLLLEDVVSVSDDSAVCRVTVSPSGVLAPFLDPDGNLPGWFTLELMAQTVGVWS 70

Query: 71  GYQELRQGGRA-KIGFLLGARRYSCSVPEFVSGLRLGVSVQLLLQAENGLGSFDCRITDL 129
           G+   +QG  + ++G +LGAR   C+     +G  L ++V+LL+Q ++  GSF+C I D 
Sbjct: 71  GWHRHQQGKNSIELGMILGARELLCTTGILPAGQTLTITVKLLMQ-DDRFGSFECSINDG 129

Query: 130 ATQQELAQATVSVFQP--HDATHYLQEG 155
                 A   ++ FQP   + T   Q+G
Sbjct: 130 E-----ATGRINTFQPTAEELTTLFQQG 152


>NMB1701 [I] COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein)
           dehydratase Nme Neisseria meningitidis MC58
          Length = 166

 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 4   TLPTIPPIE--QLLPHAAPMILIDRVVAVNEEQLQAELEIRPDSLFNNGSGVGAWVGIEY 61
           TLP  P      LLPH+  M+LIDR+    ++ ++A  ++ P+ +      +     IE 
Sbjct: 3   TLPECPITNTASLLPHSGRMVLIDRITRYGDDFVEAGAQVSPNHILLLDDKLPYTAFIEL 62

Query: 62  MAQSIAAWAGYQELRQGGRAKIGFLLGARRYSCSVPEFVSGLRLGVSVQLLLQAENGLGS 121
           MAQ++ A+AG Q  +     ++GFLLG R+          G  L  +  + +Q   G+G 
Sbjct: 63  MAQAVGAYAGIQARKNARSVRLGFLLGTRKLEIFAQSVPIGTHLLATAHMSIQDAGGMGV 122

Query: 122 FDC--RITD--------LATQQELAQATVSVFQP 145
           FDC  R TD        L +   LA+A+++V+ P
Sbjct: 123 FDCELRWTDAPETSSETLPSDGILARASLNVYSP 156