BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0034.p         (73 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0898 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4...    93   1e-19
PA3171 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    89   3e-18
NMA0410 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4...    84   9e-17
NMB2030 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4...    84   9e-17
PM0840 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    83   2e-16

>RSc0898 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Rso Ralstonia solanacearum
          Length = 260

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 54/71 (76%)

Query: 1   MAIIGAEYVLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDD 60
           +A+IGAEYVL +LP+GTHDYAKFI P+ELA + R A L+    +G+ YNPLT  Y+L  D
Sbjct: 186 LAVIGAEYVLNMLPRGTHDYAKFIRPSELAGFARTAGLEPAQLRGLEYNPLTGRYALTHD 245

Query: 61  TSVNYLVACTK 71
           TSVNYL+A  +
Sbjct: 246 TSVNYLIATRR 256


>PA3171 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Pae Pseudomonas aeruginosa
          Length = 232

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/72 (52%), Positives = 53/72 (73%)

Query: 2   AIIGAEYVLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDT 61
           A+IGAEY+L+LLP+GTHD+ KFI P+EL  ++R+A L++    G+ YNPLTK Y L +D 
Sbjct: 161 AVIGAEYILQLLPRGTHDFRKFIRPSELGAWSREAGLEVKDIIGLTYNPLTKHYKLANDV 220

Query: 62  SVNYLVACTKLA 73
            VNY+V   + A
Sbjct: 221 DVNYMVQTKREA 232


>NMA0410 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase NmA Neisseria meningitidis Z2491
          Length = 238

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 48/67 (71%)

Query: 3   IIGAEYVLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTS 62
           I+ AEY+L+ +PKGTHD+ KFI PAELA   RQA L +   KGM Y+ L++ Y+L D T 
Sbjct: 168 IVAAEYLLKFVPKGTHDWKKFIVPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTD 227

Query: 63  VNYLVAC 69
           VNY+ AC
Sbjct: 228 VNYMFAC 234


>NMB2030 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Nme Neisseria meningitidis MC58
          Length = 242

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 48/67 (71%)

Query: 3   IIGAEYVLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTS 62
           I+ AEY+L+ +PKGTHD+ KFI PAELA   RQA L +   KGM Y+ L++ Y+L D T 
Sbjct: 172 IVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTD 231

Query: 63  VNYLVAC 69
           VNY+ AC
Sbjct: 232 VNYMFAC 238


>PM0840 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Pmu Pasteurella multocida
          Length = 242

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 46/68 (67%)

Query: 1   MAIIGAEYVLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDD 60
           + IIGAEYVL++LPKGTHDY KFI PAEL H+  +A L      G  YNPLT  + LN D
Sbjct: 170 LVIIGAEYVLKMLPKGTHDYDKFIKPAELLHWCDEAQLTCLDMVGYHYNPLTGKFWLNKD 229

Query: 61  TSVNYLVA 68
            S NY+ +
Sbjct: 230 VSANYMAS 237