BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0033.p         (65 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0898 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4...    79   2e-15
PA3171 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    75   3e-14
NMB2030 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4...    75   5e-14
NMA0410 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4...    75   5e-14
PM0840 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    70   1e-12

>RSc0898 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Rso Ralstonia solanacearum
          Length = 260

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 46/63 (73%)

Query: 1   VLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTSVNYLVA 60
           VL +LP+GTHDYAKFI P+ELA + R A L+    +G+ YNPLT  Y+L  DTSVNYL+A
Sbjct: 194 VLNMLPRGTHDYAKFIRPSELAGFARTAGLEPAQLRGLEYNPLTGRYALTHDTSVNYLIA 253

Query: 61  CTK 63
             +
Sbjct: 254 TRR 256


>PA3171 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Pae Pseudomonas aeruginosa
          Length = 232

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 46/65 (70%)

Query: 1   VLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTSVNYLVA 60
           +L+LLP+GTHD+ KFI P+EL  ++R+A L++    G+ YNPLTK Y L +D  VNY+V 
Sbjct: 168 ILQLLPRGTHDFRKFIRPSELGAWSREAGLEVKDIIGLTYNPLTKHYKLANDVDVNYMVQ 227

Query: 61  CTKLA 65
             + A
Sbjct: 228 TKREA 232


>NMB2030 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Nme Neisseria meningitidis MC58
          Length = 242

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 1   VLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTSVNYLVA 60
           +L+ +PKGTHD+ KFI PAELA   RQA L +   KGM Y+ L++ Y+L D T VNY+ A
Sbjct: 178 LLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTDVNYMFA 237

Query: 61  C 61
           C
Sbjct: 238 C 238


>NMA0410 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase NmA Neisseria meningitidis Z2491
          Length = 238

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 1   VLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTSVNYLVA 60
           +L+ +PKGTHD+ KFI PAELA   RQA L +   KGM Y+ L++ Y+L D T VNY+ A
Sbjct: 174 LLKFVPKGTHDWKKFIVPAELARMCRQAGLDVADTKGMTYHVLSQTYALCDSTDVNYMFA 233

Query: 61  C 61
           C
Sbjct: 234 C 234


>PM0840 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Pmu Pasteurella multocida
          Length = 242

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query: 1   VLRLLPKGTHDYAKFITPAELAHYTRQADLQIDGFKGMGYNPLTKIYSLNDDTSVNYLVA 60
           VL++LPKGTHDY KFI PAEL H+  +A L      G  YNPLT  + LN D S NY+ +
Sbjct: 178 VLKMLPKGTHDYDKFIKPAELLHWCDEAQLTCLDMVGYHYNPLTGKFWLNKDVSANYMAS 237