BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0031.p         (203 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0900 [M] COG2885 Outer membrane protein and related peptidogl...   167   1e-41
PA1777 [M] COG2885 Outer membrane protein and related peptidogly...   101   1e-21
RSc2380 [M] COG2885 Outer membrane protein and related peptidogl...   100   2e-21
PA3692 [M] COG2885 Outer membrane protein and related peptidogly...   100   3e-21
ompA [M] COG2885 Outer membrane protein and related peptidoglyca...    97   2e-20

>RSc0900 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 218

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 95/124 (76%), Gaps = 8/124 (6%)

Query: 87  SEKVTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKL 146
           SEKVT+AADA FDFDKA LKP GK+KLD+LV  LK I LEV+IAVGHTDS GS  YN +L
Sbjct: 92  SEKVTFAADALFDFDKAVLKPEGKSKLDDLVSKLKGITLEVVIAVGHTDSFGSDKYNDRL 151

Query: 147 SVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAK--------NRRVEIEV 198
           SVRRAE+VK YLVSKG+EANRVYTEGKGK Q   D K+  G  K        NRRVE+EV
Sbjct: 152 SVRRAEAVKGYLVSKGIEANRVYTEGKGKRQLKVDPKSCKGARKAQIACQQPNRRVEVEV 211

Query: 199 VGTR 202
           VGTR
Sbjct: 212 VGTR 215


>PA1777 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 350

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 80/145 (55%), Gaps = 10/145 (6%)

Query: 59  NGPCEE----PPAPAPVAAAAPAAPAAAAAPTSEKVTYAADAFFDFDKATLKPAGKAKLD 114
           +G C+     P  PA V   A   PA A     E V    D  FDFDK+ +K    A + 
Sbjct: 206 DGVCDNVDKCPDTPANVTVDANGCPAVA-----EVVRVQLDVKFDFDKSKVKENSYADIK 260

Query: 115 ELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSK-GVEANRVYTEGK 173
            L   +K          GHTDS+G+ AYNQKLS RRA +V+  LV++ GVE  RV   G 
Sbjct: 261 NLADFMKQYPSTSTTVEGHTDSVGTDAYNQKLSERRANAVRDVLVNEYGVEGGRVNAVGY 320

Query: 174 GKSQPVADNKTAAGRAKNRRVEIEV 198
           G+S+PVADN TA GRA NRRVE EV
Sbjct: 321 GESRPVADNATAEGRAINRRVEAEV 345


>RSc2380 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 209

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 67/110 (60%)

Query: 87  SEKVTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKL 146
           S K+   +   FD D A +KP+ +  LD +   L          VGHTDS G+  YN  L
Sbjct: 93  SLKLNIPSQVSFDTDSAVIKPSFRGPLDSVAETLSQHPELAANVVGHTDSTGNPNYNMSL 152

Query: 147 SVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEI 196
           S RRA+SV +YL  +GV  NR+  EG+G++QPV DN T AGRA+NRRVEI
Sbjct: 153 SQRRAQSVASYLTDRGVARNRMSAEGRGQTQPVGDNATEAGRAQNRRVEI 202


>PA3692 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 261

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 90  VTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVR 149
           VT+  D  FD DK+ LKP     + +L   L+      +I  G+TDS GS  YNQ+LS R
Sbjct: 139 VTFG-DVLFDLDKSDLKPGAMRNIQQLAEFLQQNPERQVIVEGYTDSTGSANYNQRLSER 197

Query: 150 RAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198
           RA+SV+  L+S+G+   RV T G GK  PVA N T++GRA NRRVE+ +
Sbjct: 198 RADSVRMALLSRGISPERVATRGYGKEYPVASNGTSSGRAMNRRVEVTI 246


>ompA [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Eco Escherichia
           coli K12
          Length = 346

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 11/127 (8%)

Query: 87  SEKVTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLE--VIIAVGHTDSIGSVAYNQ 144
           ++  T  +D  F+F+KATLKP G+A LD+L   L  ++ +   ++ +G+TD IGS AYNQ
Sbjct: 212 TKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQ 271

Query: 145 KLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGR---------AKNRRVE 195
            LS RRA+SV  YL+SKG+ A+++   G G+S PV  N     +         A +RRVE
Sbjct: 272 GLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVE 331

Query: 196 IEVVGTR 202
           IEV G +
Sbjct: 332 IEVKGIK 338