BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0023.p (571 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0909 [J] COG0539 Ribosomal protein S1 Rso Ralstonia solanacearum 951 0.0 NMB1301 [J] COG0539 Ribosomal protein S1 Nme Neisseria meningiti... 858 0.0 NMA1515 [J] COG0539 Ribosomal protein S1 NmA Neisseria meningiti... 854 0.0 PA3162 [J] COG0539 Ribosomal protein S1 Pae Pseudomonas aeruginosa 755 0.0 VC1915 [J] COG0539 Ribosomal protein S1 Vch Vibrio cholerae 736 0.0 >RSc0909 [J] COG0539 Ribosomal protein S1 Rso Ralstonia solanacearum Length = 562 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/559 (81%), Positives = 518/559 (92%), Gaps = 1/559 (0%) Query: 13 TSSEFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPVEEFKNDNGEV 72 T+ FAALFEES++R +M++GEVISAEVVR+DHNFV+VNAGLKSEAF+PVEEF ND GE+ Sbjct: 4 TNESFAALFEESIARSNMKAGEVISAEVVRIDHNFVVVNAGLKSEAFVPVEEFLNDQGEL 63 Query: 73 EVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVTGTVNGKVKGGL 132 EV VGD++SVAI++LENG+GDTILSRDKAKRLASWL+LEKA+ESGEI++GTV GKVKGGL Sbjct: 64 EVQVGDYVSVAIDALENGYGDTILSRDKAKRLASWLNLEKALESGEIISGTVTGKVKGGL 123 Query: 133 TVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGE 192 TV+ NGIRAFLPGSLVD RP+KDTTP+EGKTLEFKVIKLDRKRNNVVLSRRAV+EA++GE Sbjct: 124 TVMVNGIRAFLPGSLVDVRPIKDTTPYEGKTLEFKVIKLDRKRNNVVLSRRAVVEATLGE 183 Query: 193 ERAKLMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQE 252 ER KLMETLKEG +V GIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQE Sbjct: 184 ERQKLMETLKEGAIVNGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQE 243 Query: 253 ITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGI 312 ITAK+LK+DQEKNRVSLGVKQLG+DPW G+SRRYPQGTRLFGKVTNLTDYGAFVE+E GI Sbjct: 244 ITAKILKFDQEKNRVSLGVKQLGEDPWVGISRRYPQGTRLFGKVTNLTDYGAFVEIEAGI 303 Query: 313 EGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKPNPWDDFAMS 372 EGLVHVSEMDWTNKNVAP+KVVQLGDEVEVMVL+IDE++RRISLGMKQCK NPWDDFA + Sbjct: 304 EGLVHVSEMDWTNKNVAPSKVVQLGDEVEVMVLDIDEDKRRISLGMKQCKANPWDDFARN 363 Query: 373 HKKGDKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKFKKGDELEAVVL 432 HKKGDK+ G IKSITDFGVFIGLPG IDGLVHLSDLSW E GEEAVRK+KKGDE+EAVVL Sbjct: 364 HKKGDKLAGQIKSITDFGVFIGLPGGIDGLVHLSDLSWQETGEEAVRKYKKGDEVEAVVL 423 Query: 433 AIDVERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPKGAVIQLTDEVEGYLRA 492 AIDVE+ER+SLG+KQL GDPFNNF + NDKG+IV+ T+K+V+PKGAV+QL D+VEGYLRA Sbjct: 424 AIDVEKERISLGIKQLSGDPFNNFISANDKGSIVSVTIKTVDPKGAVVQLADDVEGYLRA 483 Query: 493 SEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMSADSNA 552 SEIS DRVEDA LK G+++ A+++NIDRK+R+I +SIKAKD+A+ QEAMQK + D+ Sbjct: 484 SEISSDRVEDARNVLKEGETMTAMIVNIDRKSRNINVSIKAKDSADQQEAMQKFAQDTGT 543 Query: 553 ASGTTSLGALLKAKLDNKN 571 A GTT+LGALLKAKL+ N Sbjct: 544 A-GTTNLGALLKAKLNETN 561 >NMB1301 [J] COG0539 Ribosomal protein S1 Nme Neisseria meningitidis MC58 Length = 561 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/551 (74%), Positives = 490/551 (88%) Query: 17 FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPVEEFKNDNGEVEVNV 76 FA L EES + Q+M GEVI+AEVV +D NFV VNAGLKSE+ I V EFKN GE+EV V Sbjct: 6 FAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKV 65 Query: 77 GDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVTGTVNGKVKGGLTVLT 136 GDF++V IES+ENGFG+T LSR+KAKR A W++LE+AME+G+I++G +NGKVKGGLTV+ Sbjct: 66 GDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMI 125 Query: 137 NGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERAK 196 + IRAFLPGSLVD RPVKDT+ FEGK +EFKVIKLD+KRNNVV+SRRAV+EA++GEER Sbjct: 126 SSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKA 185 Query: 197 LMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAK 256 L+E L+EG+V+ GIVKNITDYGAFVDLGGIDGLLHITDLAWRRV+HPSEVL VGQE+ AK Sbjct: 186 LLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAK 245 Query: 257 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGIEGLV 316 VLK+DQEK RVSLG+KQLG+DPW+GL+RRYPQGTRLFGKV+NLTDYGAFVE+EQGIEGLV Sbjct: 246 VLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIEGLV 305 Query: 317 HVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKPNPWDDFAMSHKKG 376 HVSEMDWTNKNV P+KVVQLGDEVEVM+LEIDE RRRISLGMKQC+ NPW++FA +H KG Sbjct: 306 HVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKG 365 Query: 377 DKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKFKKGDELEAVVLAIDV 436 DK+ G++KSITDFGVF+GLPG IDGLVHLSDLSWTE+GEEAVRK+KKG+E+EAVVLAIDV Sbjct: 366 DKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDV 425 Query: 437 ERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPKGAVIQLTDEVEGYLRASEIS 496 E+ER+SLG+KQLEGDPF NF ++NDKG++V G+VKSV+ KGAVI L+DEVEGYL ASE + Sbjct: 426 EKERISLGIKQLEGDPFGNFISVNDKGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFA 485 Query: 497 RDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMSADSNAASGT 556 DRVED T LK GD VEA+++ +DRK RSI+LS+KAKD E++EA+ ++A +NA +GT Sbjct: 486 ADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKDAKESREALNSVNAAANANAGT 545 Query: 557 TSLGALLKAKL 567 TSLG LLKAKL Sbjct: 546 TSLGDLLKAKL 556 >NMA1515 [J] COG0539 Ribosomal protein S1 NmA Neisseria meningitidis Z2491 Length = 561 Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/551 (74%), Positives = 488/551 (88%) Query: 17 FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPVEEFKNDNGEVEVNV 76 FA L EES + Q+M GEVI+AEVV +D NFV VNAGLKSE+ I V EFKN GE+EV V Sbjct: 6 FAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIEVKV 65 Query: 77 GDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVTGTVNGKVKGGLTVLT 136 GDF++V IES+ENGFG+T LSR+KAKR A W++LE+AME+G I++G +NGKVKGGLTV+ Sbjct: 66 GDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGNILSGIINGKVKGGLTVMI 125 Query: 137 NGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEERAK 196 + IRAFLPGSLVD RPVKDT+ FEGK +EFKVIKLD+KRNNVV+SRRAV+EA++GEER Sbjct: 126 SSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKA 185 Query: 197 LMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEITAK 256 L+E L+EG+V+ GIVKNITDYGAFVDLGGIDGLLHITDLAWRRV+HPSEVL VGQE+ AK Sbjct: 186 LLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAK 245 Query: 257 VLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGIEGLV 316 VLK+DQEK RVSLG+KQLG+DPW+GL+RRYPQ TRLFGKV+NLTDYGAFVE+EQGIEGLV Sbjct: 246 VLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQDTRLFGKVSNLTDYGAFVEIEQGIEGLV 305 Query: 317 HVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKPNPWDDFAMSHKKG 376 HVSEMDWTNKNV P+KVVQLGDEVEVM+LEIDE RRRISLGMKQC+ NPW++FA +H KG Sbjct: 306 HVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKG 365 Query: 377 DKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKFKKGDELEAVVLAIDV 436 DK+ G++KSITDFGVF+GLPG IDGLVHLSDLSWTE+GEEAVRK+KKG+E+EAVVLAIDV Sbjct: 366 DKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDV 425 Query: 437 ERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPKGAVIQLTDEVEGYLRASEIS 496 E+ER+SLG+KQLEGDPF NF ++NDKG++V G+VKSV+ KGAVI L+DEVEGYL ASE + Sbjct: 426 EKERISLGIKQLEGDPFGNFISVNDKGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFA 485 Query: 497 RDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMSADSNAASGT 556 DRVED T LK GD VEA+++ +DRK RSI+LS+KAKD E++EA+ ++A +NA +GT Sbjct: 486 ADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKDAKESREALNSVNAAANANAGT 545 Query: 557 TSLGALLKAKL 567 TSLG LLKAKL Sbjct: 546 TSLGDLLKAKL 556 >PA3162 [J] COG0539 Ribosomal protein S1 Pae Pseudomonas aeruginosa Length = 559 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/557 (64%), Positives = 459/557 (82%) Query: 14 SSEFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPVEEFKNDNGEVE 73 S FA LFEESL DM+ G +I+ VV +D ++V V+AGLKSE IPVE+F N+ GE+ Sbjct: 2 SESFAELFEESLKSLDMQPGAIITGIVVDIDGDWVTVHAGLKSEGVIPVEQFYNEQGELT 61 Query: 74 VNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVTGTVNGKVKGGLT 133 + VGD + VA++++E+GFG+T LSR+KAKR SW+ LE A + E+V G +NGKVKGG T Sbjct: 62 IKVGDEVHVALDAVEDGFGETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVKGGFT 121 Query: 134 VLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEE 193 V NGIRAFLPGSLVD RPV+DTT EGK LEFKVIKLD+KRNNVV+SRR+V+EA E Sbjct: 122 VDVNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRSVLEAENSAE 181 Query: 194 RAKLMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEI 253 R L+E+L+EG V GIVKN+TDYGAFVDLGG+DGLLHITD+AW+R++HPSE+++VG EI Sbjct: 182 REALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEI 241 Query: 254 TAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGIE 313 KVLK+D+E+NRVSLG+KQLG+DPW + RYP+GTR+ +VTNLTDYG F E+E+G+E Sbjct: 242 DVKVLKFDRERNRVSLGLKQLGEDPWVAIKARYPEGTRVMARVTNLTDYGCFAELEEGVE 301 Query: 314 GLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKPNPWDDFAMSH 373 GLVHVSEMDWTNKN+ P+KVVQ+GDEVEV VL+IDEERRRISLG+KQCK NPW+DF+ Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQF 361 Query: 374 KKGDKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKFKKGDELEAVVLA 433 KGD++ G+IKSITDFG+FIGL G IDGLVHLSD+SW E GEEAVR+FKKGDELE V+L+ Sbjct: 362 NKGDRISGTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILS 421 Query: 434 IDVERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPKGAVIQLTDEVEGYLRAS 493 +D ERER+SLG+KQLE DPF+N+A+L++KG+IV GTVK V+ KGAVI L D++EG L+AS Sbjct: 422 VDPERERISLGIKQLEDDPFSNYASLHEKGSIVRGTVKEVDAKGAVISLGDDIEGILKAS 481 Query: 494 EISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMSADSNAA 553 EISRDRVEDA LK G+ VEA +I+IDRK+R I LS+K+KD + ++AM+++ + Sbjct: 482 EISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKELRKQEVES 541 Query: 554 SGTTSLGALLKAKLDNK 570 +G T++G L++A+++N+ Sbjct: 542 AGPTTIGDLIRAQMENQ 558 >VC1915 [J] COG0539 Ribosomal protein S1 Vch Vibrio cholerae Length = 556 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/553 (64%), Positives = 436/553 (78%) Query: 14 SSEFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIPVEEFKNDNGEVE 73 + FA LFEE L+ + G ++ VV +++ +V+V+AGLKSE+ IP E+FKN GE+E Sbjct: 2 TESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELE 61 Query: 74 VNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVTGTVNGKVKGGLT 133 V VG + VA++++E+GFG+T LSR+KAKR +W+ LEKA E V G +NGKVKGG T Sbjct: 62 VQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFT 121 Query: 134 VLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLSRRAVIEASMGEE 193 V NGIRAFLPGSLVD RP++DT E K LEFKVIKLD+KRNNVV+SRRAVIE+ E Sbjct: 122 VELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVE 181 Query: 194 RAKLMETLKEGTVVTGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVRHPSEVLSVGQEI 253 R +L+ETL+EGT V GIVKN+TDYGAFVDLGG+DGLLHITD+AW+RV+HPSE+++VG EI Sbjct: 182 RDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEI 241 Query: 254 TAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTDYGAFVEVEQGIE 313 KVLK+D+++ RVSLG+KQLG+DPW +++RYP+G +L G+VTNLTDYG FVE+E+G+E Sbjct: 242 LVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVE 301 Query: 314 GLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQCKPNPWDDFAMSH 373 GLVHVSEMDWTNKN+ P+KVV +GDEVEVMVL+IDEERRRISLG+KQCK NPW FA + Sbjct: 302 GLVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQ 361 Query: 374 KKGDKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKFKKGDELEAVVLA 433 KGDKV G IKSITDFG+FIGL G IDGLVHLSD+SW GEEAVR+FKKGDE+ AVVLA Sbjct: 362 AKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLA 421 Query: 434 IDVERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPKGAVIQLTDEVEGYLRAS 493 +D ERER+SLG+KQ+E DPFN + + N KGA+V GTV +V+ KGA I+L D VEGY+RAS Sbjct: 422 VDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDAKGATIELEDGVEGYIRAS 481 Query: 494 EISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQEAMQKMSADSNAA 553 E+SRDR+EDA L VGD VEA +DRK R I LSIKAKD AE QE M ++ AA Sbjct: 482 EVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLNKQDEAA 541 Query: 554 SGTTSLGALLKAK 566 G A AK Sbjct: 542 FGNAMADAFKAAK 554