BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0011.p         (68 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1192 [S] COG0718 Uncharacterized protein conserved in bacteri...   112   2e-25
PA1533 [S] COG0718 Uncharacterized protein conserved in bacteria...   103   7e-23
PM0205 [S] COG0718 Uncharacterized protein conserved in bacteria...   101   5e-22
ybaB [S] COG0718 Uncharacterized protein conserved in bacteria E...    99   3e-21
ZybaB [S] COG0718 Uncharacterized protein conserved in bacteria ...    99   3e-21

>RSc1192 [S] COG0718 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 115

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 64/75 (85%), Gaps = 7/75 (9%)

Query: 1   VKVVMTCKNDVKRVSIDPSLLAD--DKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGM 58
           VKVVMTCKNDVKRVSIDPSLLA+  DK++LEDLVAAAFNDAVRKAEAT QEKM  VT+G+
Sbjct: 41  VKVVMTCKNDVKRVSIDPSLLAEGEDKELLEDLVAAAFNDAVRKAEATTQEKMGTVTSGL 100

Query: 59  P-----LPPGFKMPF 68
                 LPPGFK+PF
Sbjct: 101 GGMASMLPPGFKLPF 115


>PA1533 [S] COG0718 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 108

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 1   VKVVMTCKNDVKRVSIDPSLLADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPL 60
           V VVMT ++DVKRVS+D SL+ +DK++LEDL+AAA NDAVRK E   QEKMSG T+GM L
Sbjct: 41  VSVVMTGRHDVKRVSLDDSLMQEDKEILEDLIAAAVNDAVRKIEQNNQEKMSGFTSGMQL 100

Query: 61  PPGFKMPF 68
           PPGFKMPF
Sbjct: 101 PPGFKMPF 108


>PM0205 [S] COG0718 Uncharacterized protein conserved in bacteria Pmu
           Pasteurella multocida
          Length = 109

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 56/68 (82%)

Query: 1   VKVVMTCKNDVKRVSIDPSLLADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPL 60
           VK+ +   ++ +RV IDPSL+ DDKDMLEDL+AAAFNDAVR+AE   +EKM+ VTAGM L
Sbjct: 42  VKITINGAHNCRRVEIDPSLMEDDKDMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMAL 101

Query: 61  PPGFKMPF 68
           PPGFKMPF
Sbjct: 102 PPGFKMPF 109


>ybaB [S] COG0718 Uncharacterized protein conserved in bacteria Eco
           Escherichia coli K12
          Length = 109

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 1   VKVVMTCKNDVKRVSIDPSLLADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPL 60
           VKV +   ++ +RV IDPSLL DDK+MLEDLVAAAFNDA R+ E T +EKM+ V++GM L
Sbjct: 42  VKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQL 101

Query: 61  PPGFKMPF 68
           PPGFKMPF
Sbjct: 102 PPGFKMPF 109


>ZybaB [S] COG0718 Uncharacterized protein conserved in bacteria EcZ
           Escherichia coli O157:H7 EDL933
          Length = 109

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 1   VKVVMTCKNDVKRVSIDPSLLADDKDMLEDLVAAAFNDAVRKAEATAQEKMSGVTAGMPL 60
           VKV +   ++ +RV IDPSLL DDK+MLEDLVAAAFNDA R+ E T +EKM+ V++GM L
Sbjct: 42  VKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQL 101

Query: 61  PPGFKMPF 68
           PPGFKMPF
Sbjct: 102 PPGFKMPF 109