BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0008.0007.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3733 [C] COG1804 Predicted acyl-CoA transferases/carnitine deh...   140   8e-34
RSc1197 [C] COG1804 Predicted acyl-CoA transferases/carnitine de...   123   1e-28
CC3562 Non COG                                                         79   3e-15
STM0072 [C] COG1804 Predicted acyl-CoA transferases/carnitine de...    64   1e-10
caiB [C] COG1804 Predicted acyl-CoA transferases/carnitine dehyd...    61   7e-10

>PA3733 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase
           Pae Pseudomonas aeruginosa
          Length = 409

 Score =  140 bits (353), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 84/129 (65%)

Query: 1   MANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDA 60
           +A+DP LA NDGR  R +E+   I +W ++Q +E  LA L  A+VP  +IYS +DM  D 
Sbjct: 281 LASDPRLASNDGRDARRDELYGVIDRWVASQPLEEVLAVLARAEVPASRIYSAEDMFRDP 340

Query: 61  QFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELGAHSDEILQSLGYDEAHI 120
           QFLAR+MF   +  DG P ++PGI PK+S TPG   W+GPELG H+D +L  LGYD   I
Sbjct: 341 QFLAREMFLSARLPDGKPFRMPGIVPKLSATPGSADWVGPELGEHTDALLAELGYDSEGI 400

Query: 121 KMLRDQGVV 129
             LR +G +
Sbjct: 401 AALRREGAI 409


>RSc1197 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase
           Rso Ralstonia solanacearum
          Length = 405

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 80/129 (62%)

Query: 1   MANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDA 60
           +A+DPGLARNDGR  R +EIDAAI  W  T +I+  LA L  ADVP G+IY+V D+  D 
Sbjct: 272 LADDPGLARNDGRAARADEIDAAINAWTGTLSIDDVLAALHEADVPGGRIYTVADIAADP 331

Query: 61  QFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELGAHSDEILQSLGYDEAHI 120
            + AR + E  +   G  V +PG+ PK+S TPG  +   P LG H+ E+L+  G  +A I
Sbjct: 332 HYRARGVIETVRAQSGIDVDMPGVVPKLSGTPGAVQASAPRLGQHTREVLRRHGLTDAQI 391

Query: 121 KMLRDQGVV 129
             L  QGV+
Sbjct: 392 DALASQGVI 400


>CC3562 Non COG
          Length = 433

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 1   MANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDA 60
           +A+DP    +  R     E+DA I  W + Q IE  L  L+ A +  G+IY   DM+ D 
Sbjct: 303 LADDPRYRDHAARGAHQAELDARIAAWTADQDIEDLLPKLEGAGLATGRIYRAPDMLTDP 362

Query: 61  QFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLGPELGAHSDEILQSL-GYDEAH 119
           Q+ AR+            +K+    P+++ETPG  +W GP LG H+D +L  + G     
Sbjct: 363 QYAARESIVTVPHPVFGEIKMQNAFPRLTETPGGVRWPGPTLGEHTDAVLADVAGMSAEA 422

Query: 120 IKMLRDQGVV 129
           I+ LR  GV+
Sbjct: 423 IEGLRKAGVL 432


>STM0072 [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase
           Sty Salmonella typhimurium LT2
          Length = 405

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 14  VPRTEEIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQF 73
            P    ++  +  W +T TI    A     ++   K+ ++ ++  + Q++AR+   Q Q 
Sbjct: 286 CPYGPLVEEKLDAWLATHTIADVQARFAELNIACAKVLTIPELEGNPQYVARESITQWQT 345

Query: 74  ADGTPVKLPGITPKMSETPGQTKWLG-PELGAHSDEILQSLGYDEAHIKMLRDQGV 128
            DG   K P I PK    PG+  W G P  G  +  IL+++GY EA IK L  +G+
Sbjct: 346 MDGRTCKGPNIMPKFKNNPGKI-WRGMPSHGMDTAAILKNIGYSEADIKELVGKGL 400


>caiB [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase
           Eco Escherichia coli K12
          Length = 405

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 14  VPRTEEIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQF 73
            P    ++  +  W +T TI          ++   K+ +V ++ ++ Q++AR+   Q Q 
Sbjct: 286 CPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQT 345

Query: 74  ADGTPVKLPGITPKMSETPGQTKWLG-PELGAHSDEILQSLGYDEAHIKMLRDQGV 128
            DG   K P I PK    PGQ  W G P  G  +  IL+++GY E  I+ L  +G+
Sbjct: 346 MDGRTCKGPNIMPKFKNNPGQI-WRGMPSHGMDTAAILKNIGYSENDIQELVSKGL 400