BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0002.p (787 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1939 [L] COG3593 Predicted ATP-dependent endonuclease of the O... 328 3e-89 MA2139 [L] COG3593 Predicted ATP-dependent endonuclease of the O... 84 1e-15 AGpA32 [L] COG3593 Predicted ATP-dependent endonuclease of the O... 67 2e-10 >PA1939 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family Pae Pseudomonas aeruginosa Length = 665 Score = 328 bits (841), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 225/663 (33%), Positives = 338/663 (50%), Gaps = 55/663 (8%) Query: 78 LTALKNFLSDSPGFRAFDLSLSHWGTLRALCQKWEALVEDPTTDNKDVEMWDEQLAILQS 137 + AL+ FL D+++++W + L +WEA E PT D L S Sbjct: 1 MLALRIFLLSPTRLNLRDVTIANWTKIDLLGSEWEAGAE-PTVD-------------LDS 46 Query: 138 CMPSIDLWFDAQEGAFSYVRPFMTSLTWEGGPIGVRV--RLEPLEDSTALRKLAWRYREA 195 +PS+D+W D +V + +L W GG +GVR+ R++ L D +A R Sbjct: 47 LLPSLDVWLDVPLREIQHVVDILPTLDWSGGLLGVRLAFRIKNL-DKLKSEYIAQRTAAR 105 Query: 196 RAPVKGLPAEG---HTWPTDLLDYWLRNPQELRRISAYRLDPAQG-PLVRPEVQDPQPLL 251 A + G E WP +L D+ R + + AY LDPA P R + PQ L Sbjct: 106 DAAIVGPNGESIKIAVWPRNLTDFLERRLRAHLELLAYPLDPAAVVPPGRSGLATPQRLP 165 Query: 252 KTAAPVELVHLRNLIRVDFVPAQRGLG----AEEDEMRTEGASAR-PGLFSNQLLKFAKQ 306 +A E + LI++D + AQR ++ E + E + R S+QL + + Sbjct: 166 ASALAFEHPPFKKLIKIDEIAAQRDFADASSSDGGEDKGEANNRRFKRRLSDQLRSYYDR 225 Query: 307 YLNVVPSSHGNKEDLVKAIGKAQLELDSSISAALRPAMEEVEELGYPGLHDAKGIHFRTR 366 +L+ + + + AI A+ D+ + A +E+E+LGYPG+ + K + T Sbjct: 226 HLDPTKTPSDKDYEALGAIQAAERSFDARLEEGFSAAFQELEDLGYPGMSNPK-LKISTL 284 Query: 367 IQTSDLLDHGTAVQYRL-DPEVAAES---LPEHSIGLGYQNLQSLSFMLVSFR-----AA 417 ++ +D L HG++VQY++ DP + LPE GLGYQNL ++ FML+ FR Sbjct: 285 LRGTDGLKHGSSVQYQVADPSGDGSNTLQLPEDYSGLGYQNLIAMVFMLMGFRDEWMRVE 344 Query: 418 RLSAKQGLPV-----PIHLVMVEEPEAHLHVQVQRNFSLKAHGLLCSKDELH--RGLRSQ 470 + +G V P+HLV+VEEPEAHLH QVQ+ F KA+ LL +L +Q Sbjct: 345 KAGILEGADVSHEIQPLHLVLVEEPEAHLHAQVQQVFINKAYTLLRKHADLGVAENYCTQ 404 Query: 471 LVISTHSSHLAHGDSFTRLRYVKRIPSDGAGKKPSTDVVNLGDVFGDDDETRTFTERYFQ 530 L++STHSSH+AH F LRY +R P+ G+ P+T V NL +FGD DET+ F +RY + Sbjct: 405 LIVSTHSSHVAHEADFANLRYFRRRPAASMGETPTTTVANLSYIFGDGDETKRFVKRYLK 464 Query: 531 VQHTDLLFADAAIFVEGTAERMLVPMFIKQNFEALAKKYISFLDIGGSHAHRLRPLVERL 590 H DL FAD IFVEG AER+LVP FI+ +F L+++Y++ L++GGSH H R LV+ L Sbjct: 465 ATHCDLFFADGVIFVEGQAERILVPHFIRHHFPELSRRYVTLLELGGSHVHSFRNLVDAL 524 Query: 591 GIPTAVITDLDPV----LPTKNAKNRTIRAAVHIAGQEGIECGNDTLTAWHPMLPMFYD- 645 GI T +I DLD + KN + T + + + N L WHP + + Sbjct: 525 GIATLIIGDLDATTAVKIIDKNMRETTRWKSARPEQGKAQQTANSVLKDWHPGKKLIDEL 584 Query: 646 YGKPTEAHLVWTSATGVKVRFAWQLPVAAASAQ------WPSSFEDSLILSNIDWFKELE 699 P + H + T+ ++ A+Q PV A P +FED+LIL N+ ++E Sbjct: 585 VALPPDGH-ISTAGGDYELYVAYQKPVNVKGASEDSDLIIPRTFEDALILENLAVAGKIE 643 Query: 700 NEV 702 + Sbjct: 644 GSI 646 >MA2139 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family Mac Methanosarcina acetivorans str.C2A Length = 689 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 29/197 (14%) Query: 392 LPEHSIGLGYQNLQSLSFMLVSFRAARLSAKQGLPVPIH-LVMVEEPEAHLHVQVQRNFS 450 +P + GLGY NL +S +L + S G I ++++EEPEAHLH +Q NF Sbjct: 312 IPIFNNGLGYNNLIYISLVLSNLEIIT-SDHFGENAKIFPILLIEEPEAHLHPALQYNF- 369 Query: 451 LKAHGLLCSKDEL-HRGLRSQLVISTHSSHLAHG---DSFTRLRYVK-----RIPSDGAG 501 L K+E+ ++ + Q+ ++THS+H+ DS + K R PS Sbjct: 370 -----LRFLKEEIKNKNISRQIFVTTHSTHITAAVGLDSIICMESHKDHILARYPSLVFS 424 Query: 502 KKPSTDVVNLGDVFGDDDETRTFTERYFQVQHTDLLFADAAIFVEGTAERMLVPMFIKQN 561 KP DD E++ + ERY +++LF+ IFVEG AE++LVP + Sbjct: 425 DKP------------DDIESKKYIERYLDATKSNMLFSKGVIFVEGLAEQLLVPRLAEYR 472 Query: 562 FEALAKKYISFLDIGGS 578 L K +I+ + +GGS Sbjct: 473 SLPLDKCHIAVVGVGGS 489 >AGpA32 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 622 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 41/265 (15%) Query: 398 GLGYQNLQSLSFMLVSFRAARLSAKQGLPVPIHLVMVEEPEAHLHVQVQRNFSLKAHGLL 457 GLGY NL ++ +L + ++VEEPEAHLH Q+Q LL Sbjct: 295 GLGYNNLIFMAVVLSEL-------SKNAEASFRSLIVEEPEAHLHPQLQ-------AVLL 340 Query: 458 CSKDELHRGLRS---QLVISTHSSHLAHGDSFTRLRYVKRIPSDGAGKKPSTDVVNLGDV 514 + G+ Q+ +++HS + A + + + + A P + VN Sbjct: 341 KYLSSIQNGVGERDVQVFVTSHSPNFASIADLNSIACLYEVDDNVASFHPGS--VNFAK- 397 Query: 515 FGDDDETRTFTERYFQVQHTDLLFADAAIFVEGTAERMLVPMFIKQNFEALAKKYISFLD 574 G ++ + RY V +L FA IFVEG AE ++V + + L IS + Sbjct: 398 -GKKEKLK----RYLDVTRAELFFARRVIFVEGAAELLMVNLLATKAGFDLRNHGISLIS 452 Query: 575 IGGSHAHRLRPLVERLG--IPTAVITDLDPVLPTKNAKNRTIRAAVHIAGQEGIECGNDT 632 + G + PL G IP +VITD DP + K + A + + E I ++T Sbjct: 453 VEGLNFDSFMPLFGEAGIKIPVSVITDADPQIEDAGGK----KTAHYPSSTEAIIVSDNT 508 Query: 633 ----------LTAWHPMLPMFYDYG 647 L +H YD+ Sbjct: 509 KSMKALEDKYLKVFHGQKTFEYDFA 533