BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0501.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1455 [TK] COG0745 Response regulators consisting of a CheY-li... 270 3e-72 NMB0595 [TK] COG0745 Response regulators consisting of a CheY-li... 253 3e-67 NMA0798 [TK] COG0745 Response regulators consisting of a CheY-li... 253 3e-67 YPO2998 [TK] COG0745 Response regulators consisting of a CheY-li... 241 9e-64 VC2692 [TK] COG0745 Response regulators consisting of a CheY-lik... 202 5e-52 >RSp1455 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 270 bits (689), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 135/229 (58%), Positives = 169/229 (73%), Gaps = 1/229 (0%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M++VLL+DDD EL ML +YL E F VA+DGEAG A AL+G +AI VLDVMMPRL+G Sbjct: 19 MTRVLLVDDDAELTGMLVQYLAHEGFAAEVAHDGEAGVARALSGDFAIVVLDVMMPRLSG 78 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 +D LRRIRA S +PVVMLTA+GD+ DRI GL+LGADDYVPKPC+P E+ AR+RAILRR S Sbjct: 79 IDALRRIRAASQVPVVMLTARGDNIDRISGLDLGADDYVPKPCTPGELVARLRAILRRTS 138 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 + + + G L++WP RRATW G LELT +EF+LLEVLAR+AG+ VSK+ +S Sbjct: 139 GADAGAA-AGAIHAGPLALWPASRRATWLGSALELTGTEFSLLEVLARHAGRLVSKEDIS 197 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 Q RPLARFDR IDVH+SSIRQK+ + I +V +GYQ + + Sbjct: 198 LQAFDRPLARFDRRIDVHISSIRQKLGQRPDGQPWIVSVRGMGYQLLAD 246 >NMB0595 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Nme Neisseria meningitidis MC58 Length = 225 Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 129/228 (56%), Positives = 169/228 (74%), Gaps = 4/228 (1%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 MS+VLL+DDD L ++L EYL E V DGEAG E L+GQY + VLD MMP++NG Sbjct: 1 MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDVVVLDSMMPKMNG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 +D L+ +RA+S++P++MLTAKGDD DRIIGLE+GADDYVPKPC+PRE+ ARI AILRRA Sbjct: 61 LDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 + + + ++V + ++P +R+A+ PLELTS+EFNLLEVL R+AG+ VSK+ LS Sbjct: 121 HSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 + L R LA+FDR+IDVH+SSIR K+ D S IQTV LGY F+K Sbjct: 181 VEALDRKLAKFDRSIDVHISSIRHKLG----DASLIQTVRGLGYLFVK 224 >NMA0798 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain NmA Neisseria meningitidis Z2491 Length = 225 Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 129/228 (56%), Positives = 169/228 (74%), Gaps = 4/228 (1%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 MS+VLL+DDD L ++L EYL E V DGEAG E L+GQY + VLD MMP++NG Sbjct: 1 MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDVVVLDSMMPKMNG 60 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 +D L+ +RA+S++P++MLTAKGDD DRIIGLE+GADDYVPKPC+PRE+ ARI AILRRA Sbjct: 61 LDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120 Query: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 + + + ++V + ++P +R+A+ PLELTS+EFNLLEVL R+AG+ VSK+ LS Sbjct: 121 HSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIK 228 + L R LA+FDR+IDVH+SSIR K+ D S IQTV LGY F+K Sbjct: 181 VEALDRKLAKFDRSIDVHISSIRHKLG----DASLIQTVRGLGYLFVK 224 >YPO2998 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 227 Score = 241 bits (615), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 115/225 (51%), Positives = 161/225 (71%), Gaps = 1/225 (0%) Query: 3 KVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNGVD 62 K+LL+DDD+EL MLKEYL E F G+AG AL+G Y +LD+M+P ++G+D Sbjct: 2 KILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALILDIMLPDMSGID 61 Query: 63 TLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRASAE 122 LR++R KS +P++MLTAKGD+ DR+IGLE+GADDY+PKPC PRE+ AR+RA+LRR + Sbjct: 62 VLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQ 121 Query: 123 NNEQSPYSPLAV-GALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLSE 181 S S + G L++ P R + W GKP +LT+SEFNLLE+L R+ + V+K LS+ Sbjct: 122 PTLSSIDSGIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELSD 181 Query: 182 QGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQF 226 +GLGRP +DR++DVH+S+IRQK+AAL + I+TV +GY+ Sbjct: 182 KGLGRPREAYDRSVDVHISNIRQKLAALPGNHLNIETVRSIGYRI 226 >VC2692 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Vch Vibrio cholerae Length = 228 Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 160/231 (69%), Gaps = 6/231 (2%) Query: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M+ +LLIDDD EL +L E L+ E FE++ A DGEAG A A++ + + +LDVMMP+LNG Sbjct: 1 MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLA-AVSDEIDLILLDVMMPKLNG 59 Query: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 ++TL+R+R K + PV+MLTAKG++ DR+IGLELGADDY+PKP S RE+ ARIRAILRR Sbjct: 60 METLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRT- 118 Query: 121 AENNEQSPYSPLAVGA--LSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQH 178 N +P + + + ++P ++ A G+ LELT++EF LL ++ G ++K+ Sbjct: 119 --QNGLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEM 176 Query: 179 LSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 LS + LG+ LA FDR ID+H+S++R+K+ K+ I+T+ GY ++E Sbjct: 177 LSIEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLMVQE 227