BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0480.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1408 [I] COG0020 Undecaprenyl pyrophosphate synthase Rso Rals... 322 5e-88 NMA0081 [I] COG0020 Undecaprenyl pyrophosphate synthase NmA Neis... 293 3e-79 NMB0186 [I] COG0020 Undecaprenyl pyrophosphate synthase Nme Neis... 291 7e-79 PA3652 [I] COG0020 Undecaprenyl pyrophosphate synthase Pae Pseud... 279 3e-75 HI0920 [I] COG0020 Undecaprenyl pyrophosphate synthase Hin Haemo... 246 4e-65 >RSc1408 [I] COG0020 Undecaprenyl pyrophosphate synthase Rso Ralstonia solanacearum Length = 258 Score = 322 bits (825), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 148/224 (66%), Positives = 185/224 (82%), Gaps = 2/224 (0%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWAT+R LPR+AGH++G+DAVR+ V+A RG+ +LTLFAFSSENWRRPA+E+S Sbjct: 23 MDGNGRWATERHLPRMAGHSRGLDAVRAAVQAADHRGVRYLTLFAFSSENWRRPAEEISF 82 Query: 61 LMRLFMTVLEREVGKMAANGIRLKIVGDMSRFDPKLQEMAAKAEAQTAANSRLTLTVCAN 120 LM+LFMT L REV K+ +GIRL++VGD+S F P++Q M +AEA+TA N LT+T+ AN Sbjct: 83 LMKLFMTALRREVSKLNDSGIRLRVVGDLSAFSPRIQLMIREAEAKTATNPGLTVTIAAN 142 Query: 121 YGGRWDVMQAVSKMIKDKPGHAD--FTEEELAPYLAMAYAPEPDLFIRTGGEQRISNFLL 178 YGGRWD++QA+ ++ D+P A TEE L+PY+A+AYA EPDLFIRTGGEQRISNF+L Sbjct: 143 YGGRWDILQAMRALVADQPDIAPEAITEEALSPYMALAYASEPDLFIRTGGEQRISNFML 202 Query: 179 WQLAYSELYFTETFWPDFDAKALDLAIASYQQRERRFGRTSAQV 222 WQLAYSELYFTE +WPDFDA +D A A Y+ RERRFGRTSAQ+ Sbjct: 203 WQLAYSELYFTERYWPDFDAAEMDRAFAWYRNRERRFGRTSAQL 246 >NMA0081 [I] COG0020 Undecaprenyl pyrophosphate synthase NmA Neisseria meningitidis Z2491 Length = 248 Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 132/222 (59%), Positives = 178/222 (80%), Gaps = 2/222 (0%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWA KRFLPR+ GH +G+DA+ ++V+ CA+ G+++LT+FAFS+ENWRRP DEVS Sbjct: 22 MDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSF 81 Query: 61 LMRLFMTVLEREVGKMAANGIRLKIVGDMSRFDPKLQEMAAKAEAQTAANSRLTLTVCAN 120 LM LF+ L+++V ++ N +RLKI+G RF+ ++ + +AEA TA N+ LTL++ A+ Sbjct: 82 LMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILKGIEEAEALTANNTGLTLSIAAD 141 Query: 121 YGGRWDVMQAVSKMIKDKPGHADFTEEELAPYLAMAYAPEPDLFIRTGGEQRISNFLLWQ 180 YGGRWD++QA +K+I + G ++ TE+ LA YL + APEPDLFIRTGGE RISNFLLWQ Sbjct: 142 YGGRWDILQAANKLIAE--GVSEITEDTLAKYLMLGDAPEPDLFIRTGGETRISNFLLWQ 199 Query: 181 LAYSELYFTETFWPDFDAKALDLAIASYQQRERRFGRTSAQV 222 +AY+ELYFT+ WPDFD KALD A+AS+Q+RERRFGRTS Q+ Sbjct: 200 MAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSEQL 241 >NMB0186 [I] COG0020 Undecaprenyl pyrophosphate synthase Nme Neisseria meningitidis MC58 Length = 248 Score = 291 bits (746), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 131/222 (59%), Positives = 178/222 (80%), Gaps = 2/222 (0%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWA KRFLPR+ GH +G+DA+ ++V+ CA+ G+++LT+FAFS+ENWRRP DEVS Sbjct: 22 MDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSF 81 Query: 61 LMRLFMTVLEREVGKMAANGIRLKIVGDMSRFDPKLQEMAAKAEAQTAANSRLTLTVCAN 120 LM LF+ L+++V ++ N +RLKI+G RF+ ++ + +AEA TA N+ LTL++ A+ Sbjct: 82 LMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAAD 141 Query: 121 YGGRWDVMQAVSKMIKDKPGHADFTEEELAPYLAMAYAPEPDLFIRTGGEQRISNFLLWQ 180 YGGRWD++QA +K+I + G ++ TE+ LA +L + APEPDLFIRTGGE RISNFLLWQ Sbjct: 142 YGGRWDILQAANKLIAE--GVSEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQ 199 Query: 181 LAYSELYFTETFWPDFDAKALDLAIASYQQRERRFGRTSAQV 222 +AY+ELYFT+ WPDFD KALD A+AS+Q+RERRFGRTS Q+ Sbjct: 200 MAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSEQL 241 >PA3652 [I] COG0020 Undecaprenyl pyrophosphate synthase Pae Pseudomonas aeruginosa Length = 251 Score = 279 bits (714), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 135/233 (57%), Positives = 168/233 (72%), Gaps = 4/233 (1%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGN RWA KR LP VAGH GVDAVR+++E CAE G+E LTLFAFSSENW+RPADEVS Sbjct: 18 MDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSA 77 Query: 61 LMRLFMTVLEREVGKMAANGIRLKIVGDMSRFDPKLQEMAAKAEAQTAANSRLTLTVCAN 120 LM LF+ L REV K+ NGIRL+I+GD +RF P+LQ +AEA TA N+R L V AN Sbjct: 78 LMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAAN 137 Query: 121 YGGRWDVMQAVSKMIKD-KPGHA---DFTEEELAPYLAMAYAPEPDLFIRTGGEQRISNF 176 YGG+WD++QA ++ ++ + GH D + E L L P PDL IRTGGE RISNF Sbjct: 138 YGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNF 197 Query: 177 LLWQLAYSELYFTETFWPDFDAKALDLAIASYQQRERRFGRTSAQVLDQKKAS 229 LLWQLAY+ELYF++ FWPDF A+ A+A + +R+RRFG+TS QV + + S Sbjct: 198 LLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPS 250 >HI0920 [I] COG0020 Undecaprenyl pyrophosphate synthase Hin Haemophilus influenzae Length = 239 Score = 246 bits (627), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 120/222 (54%), Positives = 146/222 (65%), Gaps = 4/222 (1%) Query: 1 MDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWRRPADEVSV 60 MDGNGRWA ++ R+ GH GV AVR V + G+E LTL+AFSSENW RP E+S Sbjct: 17 MDGNGRWAKQKNKMRIFGHTNGVTAVRKAVAYARQIGVEVLTLYAFSSENWSRPEQEISA 76 Query: 61 LMRLFMTVLEREVGKMAANGIRLKIVGDMSRFDPKLQEMAAKAEAQTAANSRLTLTVCAN 120 LM LFM L+REV K+ N I LKI+GD+SRF LQE KAE T N+ LTL + AN Sbjct: 77 LMSLFMQALDREVKKLHKNNICLKIIGDVSRFSETLQEKIKKAENLTEKNTALTLNIAAN 136 Query: 121 YGGRWDVMQAVS----KMIKDKPGHADFTEEELAPYLAMAYAPEPDLFIRTGGEQRISNF 176 YGG WD++QA K+ K++ +D +LA AP DL IRT GEQRISNF Sbjct: 137 YGGCWDIIQAAKQIAEKVKKEEMSVSDINNSTFQHHLATQNAPPVDLLIRTSGEQRISNF 196 Query: 177 LLWQLAYSELYFTETFWPDFDAKALDLAIASYQQRERRFGRT 218 LLWQ+AY+ELYF++ WPDF+ + AIASYQQR RRFG T Sbjct: 197 LLWQIAYAELYFSDVLWPDFNQLEFNRAIASYQQRHRRFGGT 238