BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0451.p         (138 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0314 [ET] COG0834 ABC-type amino acid transport/signal transdu...   179   1e-45
DR0564 [ET] COG0834 ABC-type amino acid transport/signal transdu...   125   3e-29
fliY [ET] COG0834 ABC-type amino acid transport/signal transduct...   105   3e-23
ZfliY [ET] COG0834 ABC-type amino acid transport/signal transduc...   105   3e-23
ECs2659 [ET] COG0834 ABC-type amino acid transport/signal transd...   105   3e-23

>PA0314 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Pae Pseudomonas
           aeruginosa
          Length = 256

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 105/136 (77%)

Query: 1   VRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKAVPGIDVRTYPGSPEYLADLAAGRIDA 60
           VR DE R+FKSLEDLKG KLG+GQGTN+   AK+V G++VRTYPG+PEYL DLA+ RIDA
Sbjct: 121 VRADETRQFKSLEDLKGLKLGVGQGTNYADLAKSVAGVNVRTYPGAPEYLQDLASKRIDA 180

Query: 61  ALNDSLLVGYILKSTNLPLKAGSPIGAVDKIGIPFRKGNPEFKAALNKALADIKADGSFK 120
           ALND LL+ + ++   LP+K G+ +G V  + IP+RK NP+F  ALN AL  IKADG F 
Sbjct: 181 ALNDRLLIPFAIREAKLPVKPGAAVGPVANMAIPYRKNNPKFGEALNAALEKIKADGRFA 240

Query: 121 AASEKWFGIDVSQPPK 136
             SEKWFG+DVSQPPK
Sbjct: 241 KLSEKWFGLDVSQPPK 256


>DR0564 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Dra Deinococcus
           radiodurans
          Length = 261

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 87/134 (64%)

Query: 1   VRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKAVPGIDVRTYPGSPEYLADLAAGRIDA 60
           V K+     +SL DLKGK++G   G+N+E++      I + TYPG+PE LADL AGRIDA
Sbjct: 128 VAKNNTFNPQSLADLKGKRVGSTLGSNYEKQLIDTGDIKIVTYPGAPEILADLVAGRIDA 187

Query: 61  ALNDSLLVGYILKSTNLPLKAGSPIGAVDKIGIPFRKGNPEFKAALNKALADIKADGSFK 120
           A ND L+V YI+    LP++    IG    +GI  +KGN   K  ++KAL ++++DG+F+
Sbjct: 188 AYNDRLVVNYIINDQKLPVRGAGQIGDAAPVGIALKKGNSALKDQIDKALTEMRSDGTFE 247

Query: 121 AASEKWFGIDVSQP 134
             S+KWFG DV QP
Sbjct: 248 KISQKWFGQDVGQP 261


>fliY [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Eco Escherichia
           coli K12
          Length = 266

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 1   VRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKA-VPGIDVRTYPGSPEYLADLAAGRID 59
           V+K  +   K+ +DLKGKK+G+G GTN+E+  +  V G+DVRTY   P    DL  GRID
Sbjct: 133 VKKGNEGTIKTADDLKGKKVGVGLGTNYEEWLRQNVQGVDVRTYDDDPTKYQDLRVGRID 192

Query: 60  AALNDSLLVGYILKSTNLPLKAGSPIGAVDKIGIPFRKGNPEFKAALNKALADIKADGSF 119
           A L D L    ++K TN  L       +  + G+  RKGN +   A+N A+A+++ DG+ 
Sbjct: 193 AILVDRLAALDLVKKTNDTLAVTGEAFSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTL 252

Query: 120 KAASEKWFGIDVSQ 133
           +A SEKWFG DV++
Sbjct: 253 QALSEKWFGADVTK 266


>ZfliY [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain EcZ Escherichia
           coli O157:H7 EDL933
          Length = 266

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 1   VRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKA-VPGIDVRTYPGSPEYLADLAAGRID 59
           V+K  +   K+ +DLKGKK+G+G GTN+E+  +  V G+DVRTY   P    DL  GRID
Sbjct: 133 VKKGNEGTIKTADDLKGKKVGVGLGTNYEEWLRQNVQGVDVRTYDDDPTKYQDLRVGRID 192

Query: 60  AALNDSLLVGYILKSTNLPLKAGSPIGAVDKIGIPFRKGNPEFKAALNKALADIKADGSF 119
           A L D L    ++K TN  L       +  + G+  RKGN +   A+N A+A+++ DG+ 
Sbjct: 193 AILVDRLAALDLVKKTNDTLAVTGEAFSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTL 252

Query: 120 KAASEKWFGIDVSQ 133
           +A SEKWFG DV++
Sbjct: 253 QALSEKWFGADVTK 266


>ECs2659 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Ecs Escherichia
           coli O157:H7
          Length = 266

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 1   VRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKA-VPGIDVRTYPGSPEYLADLAAGRID 59
           V+K  +   K+ +DLKGKK+G+G GTN+E+  +  V G+DVRTY   P    DL  GRID
Sbjct: 133 VKKGNEGTIKTADDLKGKKVGVGLGTNYEEWLRQNVQGVDVRTYDDDPTKYQDLRVGRID 192

Query: 60  AALNDSLLVGYILKSTNLPLKAGSPIGAVDKIGIPFRKGNPEFKAALNKALADIKADGSF 119
           A L D L    ++K TN  L       +  + G+  RKGN +   A+N A+A+++ DG+ 
Sbjct: 193 AILVDRLAALDLVKKTNDTLAVTGEAFSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTL 252

Query: 120 KAASEKWFGIDVSQ 133
           +A SEKWFG DV++
Sbjct: 253 QALSEKWFGADVTK 266