BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0447.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1647 [T] COG0642 Signal transduction histidine kinase Rso Ral... 204 1e-52 VC2713 [T] COG0642 Signal transduction histidine kinase Vch Vibr... 143 3e-34 STM3501 [T] COG0642 Signal transduction histidine kinase Sty Sal... 126 4e-29 envZ [T] COG0642 Signal transduction histidine kinase Eco Escher... 124 1e-28 ZenvZ [T] COG0642 Signal transduction histidine kinase EcZ Esche... 124 1e-28 >RSc1647 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia solanacearum Length = 453 Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/218 (47%), Positives = 151/218 (69%), Gaps = 1/218 (0%) Query: 1 MVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSDEARDGMHSDLAQMDSIIGQ 60 MV DL ++E+DRA++LAGISHDLRTPL R++LE EM+ + D+ R+ M +D+ QMD+IIGQ Sbjct: 230 MVRDLKQLEADRAVMLAGISHDLRTPLTRLRLETEMSPVDDQTRELMVADIEQMDAIIGQ 289 Query: 61 FLDYAKPFDTSSLETIDLADVLQDVAGNASRLSDIRVHTQITPDTQVAGNGTELARVFSN 120 FLDYA+P LE +DL ++++D A S DI + ++ P+ N E R+ N Sbjct: 290 FLDYARP-SGEMLEAVDLTELVRDTAPVYSAHDDIDLTLKLAPEAIARCNRMETQRILDN 348 Query: 121 LVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGPGVPVNECERLLRPFTRLDTAR 180 L+ENARRYGKT T AEI + + ++G++VV+ VAD G GVP ++ L RPF RL++AR Sbjct: 349 LIENARRYGKTHDTGRAEITVSTALQGNEVVLCVADRGAGVPADQLALLTRPFYRLESAR 408 Query: 181 GQANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLV 218 +A G+GLG++IV+RI+ + G+L L+ +GL+V Sbjct: 409 SEAKGAGLGMSIVSRILQRSGGRLTLENRTPPETGLVV 446 >VC2713 [T] COG0642 Signal transduction histidine kinase Vch Vibrio cholerae Length = 438 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 10/230 (4%) Query: 1 MVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSDEA-RDGMHSDLAQMDSIIG 59 M + +E DRAL++AGISHD+RTPL R++L EM + D + + SD + + II Sbjct: 216 MSKGIQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIIS 275 Query: 60 QFLDYAKPFDTSSLETIDLADVLQDVAGNASRLSDIRVHTQITPDTQVA-GNGTELARVF 118 QF+DY KP + + E +DL D+ DVA + ++++ T++ A GN + R Sbjct: 276 QFMDYLKPVNREAFEAVDLNDIASDVASSEGGY-EVQIETELQAGLAPALGNPIAIKRSL 334 Query: 119 SNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGPGVPVNECERLLRPFTRLDT 178 SNLV NA RYG ++ + V + V D+GPG+ ++ ++ PFTR DT Sbjct: 335 SNLVVNALRYGN----GWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDT 390 Query: 179 ARGQANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLVQITLPLQGHR 228 ARG + G+GLGLAIV RIV +H+G + + ++ GL QI+ P + + Sbjct: 391 ARG-SEGTGLGLAIVKRIVSQHHGAVSVSNR--SQGGLRAQISFPTKQQK 437 >STM3501 [T] COG0642 Signal transduction histidine kinase Sty Salmonella typhimurium LT2 Length = 450 Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 12/226 (5%) Query: 1 MVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSD-EARDGMHSDLAQMDSIIG 59 M A + ++ DR L++AG+SHDLRTPL R++L EM D + ++ D+ + ++II Sbjct: 223 MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIE 282 Query: 60 QFLDYAKPFDTSSLETIDLADVLQDV-AGNASRLSDIRVHTQITPDTQVAGNGTELARVF 118 QF+DY + +E DL VL +V A + +I Q QV + + R Sbjct: 283 QFIDYLRTGQEMPMEMADLNSVLGEVIAAESGYEREINTALQ-AGSIQVKMHPLSIKRAV 341 Query: 119 SNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGPGVPVNECERLLRPFTRLDT 178 +N+V NA RYG I + S E H+ +V D GPG+ + + L +PF R D+ Sbjct: 342 ANMVVNAARYGN------GWIKVSSGTESHRAWFQVEDDGPGIKPEQRKHLFQPFVRGDS 395 Query: 179 ARGQANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLVQITLPL 224 AR +G+GLGLAIV RI+ HNG L + E R GL ++ LP+ Sbjct: 396 ARS-TSGTGLGLAIVQRIIDNHNGMLEIGTSE--RGGLSIRAWLPV 438 >envZ [T] COG0642 Signal transduction histidine kinase Eco Escherichia coli K12 Length = 450 Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 12/226 (5%) Query: 1 MVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSD-EARDGMHSDLAQMDSIIG 59 M A + ++ DR L++AG+SHDLRTPL R++L EM + D + ++ D+ + ++II Sbjct: 223 MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIE 282 Query: 60 QFLDYAKPFDTSSLETIDLADVLQDVAGNASRLSDIRVHTQITPDT-QVAGNGTELARVF 118 QF+DY + +E DL VL +V S + + T + P + +V + + R Sbjct: 283 QFIDYLRTGQEMPMEMADLNAVLGEVIAAESGY-EREIETALYPGSIEVKMHPLSIKRAV 341 Query: 119 SNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGPGVPVNECERLLRPFTRLDT 178 +N+V NA RYG I + S E ++ +V D GPG+ + + L +PF R D+ Sbjct: 342 ANMVVNAARYGN------GWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS 395 Query: 179 ARGQANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLVQITLPL 224 AR +G+GLGLAIV RIV HNG L L E R GL ++ LP+ Sbjct: 396 AR-TISGTGLGLAIVQRIVDNHNGMLELGTSE--RGGLSIRAWLPV 438 >ZenvZ [T] COG0642 Signal transduction histidine kinase EcZ Escherichia coli O157:H7 EDL933 Length = 450 Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 12/226 (5%) Query: 1 MVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSD-EARDGMHSDLAQMDSIIG 59 M A + ++ DR L++AG+SHDLRTPL R++L EM + D + ++ D+ + ++II Sbjct: 223 MAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIE 282 Query: 60 QFLDYAKPFDTSSLETIDLADVLQDVAGNASRLSDIRVHTQITPDT-QVAGNGTELARVF 118 QF+DY + +E DL VL +V S + + T + P + +V + + R Sbjct: 283 QFIDYLRTGQEMPMEMADLNAVLGEVIAAESGY-EREIETALYPGSIEVKMHPLSIKRAV 341 Query: 119 SNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGPGVPVNECERLLRPFTRLDT 178 +N+V NA RYG I + S E ++ +V D GPG+ + + L +PF R D+ Sbjct: 342 ANMVVNAARYGN------GWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS 395 Query: 179 ARGQANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLVQITLPL 224 AR +G+GLGLAIV RIV HNG L L E R GL ++ LP+ Sbjct: 396 AR-TISGTGLGLAIVQRIVDNHNGMLELGTSE--RGGLSIRAWLPV 438