BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0423.p         (242 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum               353   3e-97
PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa                335   6e-92
XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c               317   1e-86
HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae                312   5e-85
PM1876 [J] COG0689 RNase PH Pmu Pasteurella multocida                 306   2e-83

>RSc2159 [J] COG0689 RNase PH Rso Ralstonia solanacearum
          Length = 238

 Score =  353 bits (905), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/237 (72%), Positives = 195/237 (82%)

Query: 6   RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
           RPSGR P+QLR V LTR YT+HAEGSVLV FGDT VLCTAS+  KVP   KG G+GW+TA
Sbjct: 2   RPSGRQPDQLRPVTLTRHYTRHAEGSVLVCFGDTHVLCTASVLPKVPPHKKGSGEGWVTA 61

Query: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
           EYGMLPRSTHTR DREAA+GKQSGRTQEIQRLIGRA+R+ FDL A GE T+ LDCDVLQA
Sbjct: 62  EYGMLPRSTHTRSDREAARGKQSGRTQEIQRLIGRAMRSVFDLSALGEHTIHLDCDVLQA 121

Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185
           DGGTRTA+ITGA VAA+DA + ++ +G +   P++ FVAA+SVGV  GVPVLDLDYPED+
Sbjct: 122 DGGTRTASITGAFVAAHDAISVMRKKGQLTGEPIRDFVAAVSVGVVDGVPVLDLDYPEDA 181

Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242
            CDTDMN+VMT AG FVEVQGTAEG  F R  ++ALL LA  GI TL GLQ+QALGL
Sbjct: 182 SCDTDMNIVMTGAGGFVEVQGTAEGTPFTRTEMDALLGLADHGIRTLIGLQKQALGL 238


>PA5334 [J] COG0689 RNase PH Pae Pseudomonas aeruginosa
          Length = 239

 Score =  335 bits (858), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 164/236 (69%), Positives = 192/236 (81%)

Query: 5   HRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLT 64
           +RPSGR+ +QLR +R+TR YTKHAEGSVLVEFGDT+V+CT S E  VP FLKG+GQGWLT
Sbjct: 2   NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLT 61

Query: 65  AEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQ 124
           AEYGMLPRST  R  REA++GKQ GRT EIQRLIGR+LRAA DL   GE TL +DCDV+Q
Sbjct: 62  AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121

Query: 125 ADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPED 184
           ADGGTRTA+ITGA VA  DA A LK +G ++  P+K  VAA+SVG+++GVPVLDLDY ED
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181

Query: 185 SDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240
           S  +TD+NVVMTDAG F+EVQGTAEGA F  A LNA+L+LAQQG+  L  LQR AL
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAAL 237


>XF1505 [J] COG0689 RNase PH Xfa Xylella fastidiosa 9a5c
          Length = 241

 Score =  317 bits (813), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/235 (66%), Positives = 186/235 (79%)

Query: 6   RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
           RPSGR  + LR VR+ R +T HAEGSVLV FG+T V+CTAS+E KVP FL+ KG+GW+TA
Sbjct: 5   RPSGRQADALRPVRIERAFTCHAEGSVLVSFGNTLVVCTASVEAKVPVFLRNKGEGWVTA 64

Query: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
           EYGMLPRSTHTR +REAA+GKQ+GRT EIQRLIGRALR   D  A GERT+ LDCDVLQA
Sbjct: 65  EYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCDVLQA 124

Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185
           DGGTRTAAITGA VA  DA   L+ +G ++  P+   VAA+SVG+++G+PVLDLDYPEDS
Sbjct: 125 DGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDYPEDS 184

Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240
           DCDTDMNVVM D G  +E+QGTAE  AF R  L+ LL LA++G A L  +QR+AL
Sbjct: 185 DCDTDMNVVMNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQREAL 239


>HI0273 [J] COG0689 RNase PH Hin Haemophilus influenzae
          Length = 238

 Score =  312 bits (799), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 152/237 (64%), Positives = 181/237 (76%)

Query: 6   RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
           RP+ R   Q R++++TR YTKHAEGSVLVEFGDT+VLCTA++E+ VP FLKG+GQGW+TA
Sbjct: 2   RPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTATVEDAVPRFLKGQGQGWVTA 61

Query: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
           EYGMLPRSTH+RM REAAKGKQ GRT EIQRLI R+LRA  DL+A GER + LDCDV+QA
Sbjct: 62  EYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQA 121

Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185
           DGGTRTA+ITGA VA  DA  GL   G ++  P+K  V+AISVG+  G  V DL+Y EDS
Sbjct: 122 DGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVEDS 181

Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242
             +TDMNVVM + G  +EVQGTAEG  F    L  LLDLA+QG   +   QR+ALGL
Sbjct: 182 AAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREALGL 238


>PM1876 [J] COG0689 RNase PH Pmu Pasteurella multocida
          Length = 238

 Score =  306 bits (785), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/235 (65%), Positives = 182/235 (77%)

Query: 6   RPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQGWLTA 65
           RP+ R+  Q R +++TR YTKHAEGSVLVEFGDT+VLCTA++EE VP FLKG+ QGW+TA
Sbjct: 2   RPNERANNQPRPIKITRHYTKHAEGSVLVEFGDTKVLCTATVEESVPRFLKGQNQGWVTA 61

Query: 66  EYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDCDVLQA 125
           EYGMLPRSTH+RM REAAKGKQ GRT EIQRLI R+LRA  DLEA GER++ LDCDV+QA
Sbjct: 62  EYGMLPRSTHSRMQREAAKGKQGGRTLEIQRLIARSLRAMVDLEALGERSITLDCDVIQA 121

Query: 126 DGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDS 185
           DGGTRTA+ITGA VA  DA  GL   G ++  P+K  VAAISVG+ +GVPV DL+Y EDS
Sbjct: 122 DGGTRTASITGACVALCDAIHGLVENGTLKVNPIKSLVAAISVGIVEGVPVCDLEYVEDS 181

Query: 186 DCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240
             +TDMNVVM + G  +EVQGTAEG  F    L  LL LA++G   +  +QRQAL
Sbjct: 182 AAETDMNVVMMEDGRMIEVQGTAEGEPFSHEELLTLLALAKEGCQLIFDVQRQAL 236