BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0407.p         (132 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1145 [P] COG1118 ABC-type sulfate/molybdate transport systems...   143   1e-34
sll0739_2 [P] COG1118 ABC-type sulfate/molybdate transport syste...   104   5e-23
MA3903 [E] COG3842 ABC-type spermidine/putrescine transport syst...    98   4e-21
MA1235 [E] COG3842 ABC-type spermidine/putrescine transport syst...    97   1e-20
MA2282 [E] COG3842 ABC-type spermidine/putrescine transport syst...    96   1e-20

>RSp1145 [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase
           component Rso Ralstonia solanacearum
          Length = 245

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 86/111 (77%)

Query: 1   VSLDLQIQKQLHAGDRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGHIR 60
           +SLD+ +QK L +  R F+LD+ L S S+R+VLYGPSGAGKSLTL+AIAGL+ P+ G I 
Sbjct: 1   MSLDVTLQKTLASAARVFSLDIVLRSDSRRVVLYGPSGAGKSLTLRAIAGLLTPERGRIV 60

Query: 61  LNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFN 111
           LNGRTLF+  E IDL  Q R V YLFQDYALF HL+VAQNIAFGL RG  N
Sbjct: 61  LNGRTLFDHAERIDLATQARRVGYLFQDYALFDHLTVAQNIAFGLRRGWLN 111


>sll0739_2 [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase
           component Syn Synechocystis
          Length = 395

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 4/103 (3%)

Query: 3   LDLQIQKQLHAGDRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGHIRLN 62
           + + IQKQL     +F+LD++  +  + + L G SG+GK++TL+ IAG+  P  G I LN
Sbjct: 38  IQVNIQKQL----AQFSLDVTFTTQGETVGLLGASGSGKTMTLRCIAGIETPTQGRIILN 93

Query: 63  GRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGL 105
           GRTLF+S   I++P   R V  + Q+YALFPHL+VAQNIAFGL
Sbjct: 94  GRTLFDSQRNINVPSHERKVGLVLQNYALFPHLTVAQNIAFGL 136


>MA3903 [E] COG3842 ABC-type spermidine/putrescine transport systems,
           ATPase components Mac Methanosarcina acetivorans str.C2A
          Length = 376

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 8/113 (7%)

Query: 1   VSLDLQIQKQLHAGDRR--------FALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLM 52
           +++++ I+K+ +    R        F+++ S  + S  +VL+G SG+GK+  L+ IAGL 
Sbjct: 1   MTVEVGIEKEFYGRKNRKKKGENPSFSMNCSFDANSDFVVLFGCSGSGKTTALRCIAGLE 60

Query: 53  RPDSGHIRLNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGL 105
            PD+G I++NG   F+S + ++LP Q R + Y+FQ+ ALFPH++V QNI FGL
Sbjct: 61  NPDAGTIKINGTVYFDSRKKVNLPPQKRKIGYMFQENALFPHMNVRQNIEFGL 113


>MA1235 [E] COG3842 ABC-type spermidine/putrescine transport systems,
           ATPase components Mac Methanosarcina acetivorans str.C2A
          Length = 377

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 65/92 (70%)

Query: 16  RRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGHIRLNGRTLFNSNEGIDL 75
           + F LD+S    ++ +VL+GPSG+GK+   K I+G+ +PD+G I +  +  ++ ++ I+L
Sbjct: 26  KAFTLDVSFEMDNELVVLFGPSGSGKTTLFKCISGITQPDNGKITVGSKIYYDKDKKINL 85

Query: 76  PVQGRNVAYLFQDYALFPHLSVAQNIAFGLAR 107
           P+Q RN+ Y+FQ+Y LFPH++V +NI  GL +
Sbjct: 86  PIQKRNLGYVFQNYTLFPHMNVRKNIECGLKK 117


>MA2282 [E] COG3842 ABC-type spermidine/putrescine transport systems,
           ATPase components Mac Methanosarcina acetivorans str.C2A
          Length = 383

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 65/92 (70%)

Query: 16  RRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGHIRLNGRTLFNSNEGIDL 75
           + F LD+S    ++ +VL+GPSG+GK+   K I+G+ +PD+G I +  +  ++ ++ I+L
Sbjct: 26  KAFTLDVSFEMDNELVVLFGPSGSGKTTLFKCISGITQPDNGKITVGSKIYYDKDKKINL 85

Query: 76  PVQGRNVAYLFQDYALFPHLSVAQNIAFGLAR 107
           P+Q RN+ Y+FQ+Y LFPH++V +NI  GL +
Sbjct: 86  PIQKRNLGYVFQNYTLFPHMNVRKNIECGLKK 117