BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0398.p         (124 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1333 [D] COG0239 Integral membrane protein possibly involved ...   129   2e-30
PA4383 [D] COG0239 Integral membrane protein possibly involved i...    98   6e-21
ZcrcB [D] COG0239 Integral membrane protein possibly involved in...    94   9e-20
ECs0663 [D] COG0239 Integral membrane protein possibly involved ...    94   9e-20
YPO2596 [D] COG0239 Integral membrane protein possibly involved ...    92   2e-19

>RSc1333 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Rso Ralstonia solanacearum
          Length = 126

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 84/122 (68%)

Query: 1   MGWLAVGMGATLGAWLRWRISVVWNVSGHFVPLGTLAANWIGAYVIGFLVAYFEQHPGLP 60
           MG++AVG+GA LGAWLRW  +V+WN     +P GTLAAN +G Y+IG  V +F+ H  LP
Sbjct: 4   MGFVAVGVGAALGAWLRWAFAVLWNAINPALPYGTLAANLLGGYLIGVAVGFFDTHASLP 63

Query: 61  PEWRLFAVTGFLGGLTTFSTFSAEAMILLQRGDYLWAIGHSGLHLLGSIVLCVAGFASYR 120
           PEWRL AVTGFLGGLTTFSTFS+E M  +  GDY   + H   HL GS+ L + G  + R
Sbjct: 64  PEWRLLAVTGFLGGLTTFSTFSSEVMANILAGDYAIGMLHVAAHLGGSLFLTMLGLWTVR 123

Query: 121 AL 122
            L
Sbjct: 124 TL 125


>PA4383 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Pae Pseudomonas aeruginosa
          Length = 127

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 65/104 (62%)

Query: 17  RWRISVVWNVSGHFVPLGTLAANWIGAYVIGFLVAYFEQHPGLPPEWRLFAVTGFLGGLT 76
           RW + +  N     +P GTL AN +G YVIG  +AYF Q PG+ PEWRL  +TGF GGLT
Sbjct: 19  RWFLGLKLNSLLPSIPPGTLLANLVGGYVIGAAIAYFAQAPGIAPEWRLLIITGFCGGLT 78

Query: 77  TFSTFSAEAMILLQRGDYLWAIGHSGLHLLGSIVLCVAGFASYR 120
           TFSTFSAE + LLQ G   WA G    H+ GS+++ + G  S  
Sbjct: 79  TFSTFSAEVVSLLQEGRLGWAAGAIATHVSGSLLMTLLGLFSMN 122


>ZcrcB [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation EcZ Escherichia coli O157:H7
           EDL933
          Length = 127

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 72/113 (63%)

Query: 4   LAVGMGATLGAWLRWRISVVWNVSGHFVPLGTLAANWIGAYVIGFLVAYFEQHPGLPPEW 63
           LAV +G   G+  RW +S+ +N     +PLGTLAAN IGA++IG   A+F +   + P W
Sbjct: 6   LAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLAANLIGAFIIGMGFAWFSRMTNIDPVW 65

Query: 64  RLFAVTGFLGGLTTFSTFSAEAMILLQRGDYLWAIGHSGLHLLGSIVLCVAGF 116
           ++   TGF GGLTTFSTFSAE + LLQ G + WA+ +  ++LLGS  +    F
Sbjct: 66  KVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAF 118


>ECs0663 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Ecs Escherichia coli O157:H7
          Length = 127

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 72/113 (63%)

Query: 4   LAVGMGATLGAWLRWRISVVWNVSGHFVPLGTLAANWIGAYVIGFLVAYFEQHPGLPPEW 63
           LAV +G   G+  RW +S+ +N     +PLGTLAAN IGA++IG   A+F +   + P W
Sbjct: 6   LAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLAANLIGAFIIGMGFAWFSRMTNIDPVW 65

Query: 64  RLFAVTGFLGGLTTFSTFSAEAMILLQRGDYLWAIGHSGLHLLGSIVLCVAGF 116
           ++   TGF GGLTTFSTFSAE + LLQ G + WA+ +  ++LLGS  +    F
Sbjct: 66  KVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAF 118


>YPO2596 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Ype Yersinia pestis
          Length = 127

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 70/113 (61%)

Query: 4   LAVGMGATLGAWLRWRISVVWNVSGHFVPLGTLAANWIGAYVIGFLVAYFEQHPGLPPEW 63
           LAV +G  +G+  RW +S+  N +   +P+GTL  N +GA++IG  +A+F +   + P W
Sbjct: 6   LAVFIGGGVGSMARWLVSLKLNSASAHLPVGTLIVNLVGAFIIGLTLAFFSRMTHIDPVW 65

Query: 64  RLFAVTGFLGGLTTFSTFSAEAMILLQRGDYLWAIGHSGLHLLGSIVLCVAGF 116
           +L   TGF GGLTTFSTFS E + L+Q G   WA G   L++ GS+ + +  F
Sbjct: 66  KLLITTGFCGGLTTFSTFSVEVVYLIQEGKLAWAAGTILLNVAGSLAMTMLAF 118