BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0388.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1332 [H] COG0314 Molybdopterin converting factor, large subun...   223   1e-58
HI1673 [H] COG0314 Molybdopterin converting factor, large subuni...   171   6e-43
PM0622 [H] COG0314 Molybdopterin converting factor, large subuni...   167   5e-42
PA3916 [H] COG0314 Molybdopterin converting factor, large subuni...   166   2e-41
VC1028 [H] COG0314 Molybdopterin converting factor, large subuni...   166   2e-41

>RSc1332 [H] COG0314 Molybdopterin converting factor, large subunit Rso
           Ralstonia solanacearum
          Length = 176

 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/150 (69%), Positives = 121/150 (80%), Gaps = 1/150 (0%)

Query: 1   MP-VRVQTADFDLSTEVAQLRLSNPRVGAVVSFVGAVRDLNEGAAVSEMELEHYPAMTER 59
           MP +RVQ ADFDL  E+A LR   P++GAV SF+G VRD+N+G+ VSEMELEHYP MTE+
Sbjct: 1   MPTIRVQEADFDLGAEIAALRAGRPQIGAVASFIGTVRDINDGSGVSEMELEHYPGMTEK 60

Query: 60  ALEQIVEQAKARWPIFDALVIHRVGPLLPREQIVLVAVTSPHRGEAFAACEFIMDYLKTQ 119
           AL  IV+ A  RW + DALVIHRVG L P +QIVLVAV S HRGEAFAACEFIMDYLK++
Sbjct: 61  ALANIVDAAMQRWDLIDALVIHRVGKLRPEDQIVLVAVASGHRGEAFAACEFIMDYLKSE 120

Query: 120 APFWKKEQTPQGERWVDARESDDTALAKWS 149
           APFWKKEQT QG RWVDAR +D+ ALA+W 
Sbjct: 121 APFWKKEQTAQGARWVDARVTDERALARWG 150


>HI1673 [H] COG0314 Molybdopterin converting factor, large subunit Hin
           Haemophilus influenzae
          Length = 150

 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 104/148 (70%), Gaps = 1/148 (0%)

Query: 1   MPVRVQTADFDLSTEVAQLRLSNPRVGAVVSFVGAVRDLNEGAAVSEMELEHYPAMTERA 60
           + + VQ   FD +  V Q       +GA V FVG VRDLN G  VS + LEHYPAMTE+A
Sbjct: 4   IQIAVQEQPFDQNA-VYQWLSEQHSIGATVIFVGKVRDLNLGDEVSSLYLEHYPAMTEKA 62

Query: 61  LEQIVEQAKARWPIFDALVIHRVGPLLPREQIVLVAVTSPHRGEAFAACEFIMDYLKTQA 120
           L +IV QAK RW I    VIHRVG L   ++IVLV V+S HRG+A+ A EFIMD+LK++A
Sbjct: 63  LNEIVAQAKVRWDIQRVSVIHRVGLLQTGDEIVLVGVSSAHRGDAYHANEFIMDFLKSKA 122

Query: 121 PFWKKEQTPQGERWVDARESDDTALAKW 148
           PFWKKEQT QGERW++ARESD  AL KW
Sbjct: 123 PFWKKEQTNQGERWIEARESDKEALEKW 150


>PM0622 [H] COG0314 Molybdopterin converting factor, large subunit Pmu
           Pasteurella multocida
          Length = 150

 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 96/123 (78%)

Query: 26  VGAVVSFVGAVRDLNEGAAVSEMELEHYPAMTERALEQIVEQAKARWPIFDALVIHRVGP 85
           VGA V FVG VRDLN G  VS + LEHYPAMTE+AL +IV QAKARW I    VIHRVG 
Sbjct: 28  VGATVVFVGKVRDLNLGDEVSSLYLEHYPAMTEKALTEIVAQAKARWDIQRVCVIHRVGL 87

Query: 86  LLPREQIVLVAVTSPHRGEAFAACEFIMDYLKTQAPFWKKEQTPQGERWVDARESDDTAL 145
           L   ++IV V V+S HRGEA+ A EFIMD+LK++APFWKKE+T QGERW+++R++D  AL
Sbjct: 88  LQTGDEIVFVGVSSAHRGEAYQANEFIMDFLKSKAPFWKKEKTTQGERWIESRDTDQQAL 147

Query: 146 AKW 148
           A+W
Sbjct: 148 ARW 150


>PA3916 [H] COG0314 Molybdopterin converting factor, large subunit Pae
           Pseudomonas aeruginosa
          Length = 150

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 96/150 (64%)

Query: 1   MPVRVQTADFDLSTEVAQLRLSNPRVGAVVSFVGAVRDLNEGAAVSEMELEHYPAMTERA 60
           M +RVQ A FD   E+  L   N  +GAVV FVG VRD N+G  V  M LEHYP MTE+A
Sbjct: 1   MAIRVQQAAFDPGQELNALHAQNVGIGAVVGFVGYVRDFNDGREVGGMFLEHYPGMTEKA 60

Query: 61  LEQIVEQAKARWPIFDALVIHRVGPLLPREQIVLVAVTSPHRGEAFAACEFIMDYLKTQA 120
           L +I  +A  RWP+    ++HR+G L P E IV V   S HR  AF AC F+MDYLKT+A
Sbjct: 61  LGKIAAEAGQRWPLLRLEILHRIGRLEPGEPIVFVGCASAHRQAAFDACNFVMDYLKTRA 120

Query: 121 PFWKKEQTPQGERWVDARESDDTALAKWSQ 150
           PFWKKE T +G RWV+ R SD  A  +W +
Sbjct: 121 PFWKKEDTAEGPRWVEGRCSDQAAAQRWEE 150


>VC1028 [H] COG0314 Molybdopterin converting factor, large subunit Vch
           Vibrio cholerae
          Length = 150

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 101/146 (69%), Gaps = 1/146 (0%)

Query: 3   VRVQTADFDLSTEVAQLRLSNPRVGAVVSFVGAVRDLNEGAAVSEMELEHYPAMTERALE 62
           V VQ  DF ++ E   L     + GAVV+FVG VRD+N G  V  + LEHYP MTE++L 
Sbjct: 5   VSVQKEDFSVAQEYEAL-AQGSQAGAVVTFVGKVRDMNLGDNVVGLHLEHYPGMTEKSLL 63

Query: 63  QIVEQAKARWPIFDALVIHRVGPLLPREQIVLVAVTSPHRGEAFAACEFIMDYLKTQAPF 122
           +I + A+ RWP+    VIHR+G +L  +QIVLV V+S HR  AFAACEFIMDYLKT+APF
Sbjct: 64  EICDMAQERWPLQRVRVIHRIGDMLSGDQIVLVGVSSAHRNAAFAACEFIMDYLKTRAPF 123

Query: 123 WKKEQTPQGERWVDARESDDTALAKW 148
           WKKE T +  RW+D+R+SD  A  +W
Sbjct: 124 WKKELTTEASRWIDSRDSDHQAAQRW 149