BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0363.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1310 [J] COG0359 Ribosomal protein L9 Rso Ralstonia solanacearum   196   1e-50
NMB1320 [J] COG0359 Ribosomal protein L9 Nme Neisseria meningiti...   170   1e-42
NMA1534 [J] COG0359 Ribosomal protein L9 NmA Neisseria meningiti...   169   2e-42
rplI [J] COG0359 Ribosomal protein L9 Eco Escherichia coli K12        144   1e-34
ZrplI [J] COG0359 Ribosomal protein L9 EcZ Escherichia coli O157...   144   1e-34

>RSc1310 [J] COG0359 Ribosomal protein L9 Rso Ralstonia solanacearum
          Length = 150

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 121/134 (90%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRAELEKAAAE 60
           MQ+ILLEK+VNLG LGDVVRVKDG+ARNFLIP ++ARRAT +AI EFEA+RAELEK AAE
Sbjct: 1   MQIILLEKVVNLGNLGDVVRVKDGYARNFLIPNKQARRATASAIQEFEARRAELEKLAAE 60

Query: 61  KLAAAQAQGEKLAGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKAQVRLPNGP 120
           +LAAAQA+GEKL G T+++SQKAGVDGRLFGSVTN DIA AL  +GF VEKAQVR+PNGP
Sbjct: 61  RLAAAQAEGEKLNGLTLQLSQKAGVDGRLFGSVTNHDIAAALTAQGFKVEKAQVRMPNGP 120

Query: 121 LKIVGEHPVSVALH 134
           LK VG+HPV+V+LH
Sbjct: 121 LKTVGDHPVAVSLH 134


>NMB1320 [J] COG0359 Ribosomal protein L9 Nme Neisseria meningitidis MC58
          Length = 150

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 111/145 (76%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRAELEKAAAE 60
           MQ+ILLEKI  LG LGD+V VK+G+ARNFLIP  KA+RAT+A + EFEA+RAELE   AE
Sbjct: 1   MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANMKEFEARRAELEAKQAE 60

Query: 61  KLAAAQAQGEKLAGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKAQVRLPNGP 120
            LA A+ + EKL G TV V+QKAGVDGRLFGSVTN DIA A+   G    KA VRLPNGP
Sbjct: 61  ILADARVRQEKLDGQTVTVAQKAGVDGRLFGSVTNADIAAAIVAAGIEAVKANVRLPNGP 120

Query: 121 LKIVGEHPVSVALHTDVVVDVTIAV 145
           LK VGE+ V VALHTD V  +T+AV
Sbjct: 121 LKAVGEYEVEVALHTDAVAKITVAV 145


>NMA1534 [J] COG0359 Ribosomal protein L9 NmA Neisseria meningitidis Z2491
          Length = 150

 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 111/145 (76%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRAELEKAAAE 60
           MQ+ILLEKI  LG LGD+V VK+G+ARNFLIP  KA+RAT+A + EFEA+RAELE   AE
Sbjct: 1   MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANMKEFEARRAELEAKQAE 60

Query: 61  KLAAAQAQGEKLAGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKAQVRLPNGP 120
            LA A+ + EKL G T+ V+QKAGVDGRLFGSVTN DIA A+   G    KA VRLPNGP
Sbjct: 61  ILADARVRQEKLDGQTITVAQKAGVDGRLFGSVTNADIAAAIVAAGIEAVKANVRLPNGP 120

Query: 121 LKIVGEHPVSVALHTDVVVDVTIAV 145
           LK VGE+ V VALHTD V  +T+AV
Sbjct: 121 LKAVGEYEVEVALHTDAVAKITVAV 145


>rplI [J] COG0359 Ribosomal protein L9 Eco Escherichia coli K12
          Length = 149

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRAELEKAAAE 60
           MQVILL+K+ NLG LGD V VK G+ARNFL+PQ KA  AT   I  FEA+RAELE   AE
Sbjct: 1   MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60

Query: 61  KLAAAQAQGEKL-AGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKAQVRLPNG 119
            LAAA A+ EK+ A  TV ++ KAG +G+LFGS+   DIA+A+   G  V K++VRLPNG
Sbjct: 61  VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120

Query: 120 PLKIVGEHPVSVALHTDVVVDVTIAVKGE 148
            L+  GEH VS  +H++V   V + V  E
Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNVVAE 149


>ZrplI [J] COG0359 Ribosomal protein L9 EcZ Escherichia coli O157:H7
           EDL933
          Length = 149

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 102/149 (68%), Gaps = 1/149 (0%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRAELEKAAAE 60
           MQVILL+K+ NLG LGD V VK G+ARNFL+PQ KA  AT   I  FEA+RAELE   AE
Sbjct: 1   MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60

Query: 61  KLAAAQAQGEKL-AGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKAQVRLPNG 119
            LAAA A+ EK+ A  TV ++ KAG +G+LFGS+   DIA+A+   G  V K++VRLPNG
Sbjct: 61  VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120

Query: 120 PLKIVGEHPVSVALHTDVVVDVTIAVKGE 148
            L+  GEH VS  +H++V   V + V  E
Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNVVAE 149