BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0356.p         (119 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1093 [N] COG1334 Uncharacterized flagellar protein FlaG Pae Ps...    59   3e-09

>PA1093 [N] COG1334 Uncharacterized flagellar protein FlaG Pae Pseudomonas
           aeruginosa
          Length = 123

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 15/112 (13%)

Query: 14  SGTAYALPKTAA----KPDPVVSTVAPVAAPDARRATDS--EVNDAVSKLNDFAASNAAA 67
           SG  +A P++AA    KP P V+         +R A++S  ++  AVS +  F  S    
Sbjct: 21  SGDIFA-PRSAADGSGKPLPEVTA--------SREASESRDDLGLAVSDIQSFVQSVKRN 71

Query: 68  LNFSKDEDTGKTIVKVMDTATDTVIRQIPSEEAIAIAKSIDKMQGLLINHKA 119
           LNFS D+ +G+ +VKV+D  +  V+RQIPSEE + +A  +D +  +L   +A
Sbjct: 72  LNFSIDDSSGQVVVKVIDGDSGEVVRQIPSEEVLKLAARLDDVHSVLFETRA 123