BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0349.p         (114 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic d...    79   3e-15
BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    72   4e-13
Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic d...    71   6e-13
PA1473 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    69   4e-12
CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic do...    65   4e-11

>BS_ylqH [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Bsu Bacillus subtilis
          Length = 93

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 3  KPNIPLQNAVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQV 61
          K   P++ AVAL Y+  +  AP+V+A G+G VA+ II  A+++GV + E + LV L+  +
Sbjct: 2  KEQTPIRKAVALHYDEQKDKAPRVIATGKGHVADNIIKEAKKAGVPIQEDRTLVELMRHL 61

Query: 62 ELDQQIPPALYRTVAELLAWLYRIE 86
           +D QIP ALY TVAE+ +++Y+++
Sbjct: 62 TVDDQIPEALYETVAEIFSFIYKLD 86


>BH2473 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Bha Bacillus halodurans
          Length = 92

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 1/80 (1%)

Query: 9  QNAVALAYN-ASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVELDQQI 67
          + AVA+ YN   + AP+++ KG+GLVA+ +I RA E+ V + +   LV LL Q+E+++ I
Sbjct: 8  RQAVAVRYNREKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVELLGQLEINETI 67

Query: 68 PPALYRTVAELLAWLYRIEN 87
          P  LY  VAEL A++Y+I+ 
Sbjct: 68 PEELYEVVAELFAFIYQIDQ 87


>Cj0848c [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Cje Campylobacter jejuni
          Length = 93

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 59/88 (67%), Gaps = 1/88 (1%)

Query: 1  MEKPNIPLQNAVALAYNASQ-AAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLM 59
          M K    ++ AVAL Y   + +AP+V+A G+G  A  II+ A+E GV + E ++L+ +L 
Sbjct: 1  MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKEHGVPIKEDEDLIEILS 60

Query: 60 QVELDQQIPPALYRTVAELLAWLYRIEN 87
          +++L  +IPP +Y+ VAE+ A++Y++ N
Sbjct: 61 KLDLGDEIPPNMYKAVAEVFAFIYQMAN 88


>PA1473 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Pae Pseudomonas aeruginosa
          Length = 111

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 57/79 (72%), Gaps = 1/79 (1%)

Query: 9  QNAVALAYNASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVELDQQIP 68
          + A+AL+Y+  QAAP + AKG   +AEAI+A AR+  V ++E+ ELV LL ++EL   IP
Sbjct: 10 RQAIALSYD-GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLARLELGDAIP 68

Query: 69 PALYRTVAELLAWLYRIEN 87
           ALYRT+AE++A+ + ++ 
Sbjct: 69 EALYRTIAEIIAFAWHLKG 87


>CC1907 [S] COG2257 Uncharacterized homolog of the cytoplasmic domain of
          flagellar protein FhlB Ccr Caulobacter vibrioides
          Length = 87

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 3  KPNIPLQNAVALAYNASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQVE 62
          KP I    AVAL Y    A P+VVA G+G + E II  A+E GV + E   L   L  +E
Sbjct: 10 KPRI----AVALLYEEPNA-PKVVASGQGWIGEKIIETAKEHGVPIEEDPVLAQALSTIE 64

Query: 63 LDQQIPPALYRTVAELLAWLYR 84
          +D++IP ALYR VAE+L++L +
Sbjct: 65 IDEEIPEALYRAVAEVLSFLLK 86