BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0341.p         (146 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO1826 [NUO] COG2882 Flagellar biosynthesis chaperone Ype Yersi...    86   2e-17
RSp0394 [NUO] COG2882 Flagellar biosynthesis chaperone Rso Ralst...    84   1e-16
STM1973 [NUO] COG2882 Flagellar biosynthesis chaperone Sty Salmo...    74   8e-14
ZfliJ [NUO] COG2882 Flagellar biosynthesis chaperone EcZ Escheri...    72   3e-13
ECs2681 [NUO] COG2882 Flagellar biosynthesis chaperone Ecs Esche...    72   3e-13

>YPO1826 [NUO] COG2882 Flagellar biosynthesis chaperone Ype Yersinia pestis
          Length = 148

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 83/140 (59%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAVRVSEEAQQKLGILQQYRDDYAARFQETLSNG 60
           M + S L TL +LA K  ++A+ +LG   +  + A+Q+L +L  Y+D+Y  R  +TL NG
Sbjct: 1   MKSQSPLVTLCDLAQKAVEQASTQLGHVRQSYQNAEQQLTMLLTYQDEYRERLNDTLCNG 60

Query: 61  LTALSYRNFQLFIEKIDNAIAGQEDVVRSSQQRVAEARAAWQACERKRMSYDTLATRARD 120
           + + S++N+Q FI+ ++ AI      +     +V +A   WQ  +++  +++TL  RA  
Sbjct: 61  MASSSWQNYQQFIQTLEQAIDQHRKQLAQWSIKVEQAVKYWQEKQQRLNAFETLQERAET 120

Query: 121 KEMQKQNKRDQKSMDEHASR 140
            + Q++N+ DQK MDE A R
Sbjct: 121 TQRQQENRLDQKLMDEFAQR 140


>RSp0394 [NUO] COG2882 Flagellar biosynthesis chaperone Rso Ralstonia
           solanacearum
          Length = 155

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 81/138 (58%)

Query: 4   PSALDTLIELATKETDEATKRLGRAVRVSEEAQQKLGILQQYRDDYAARFQETLSNGLTA 63
           P  L+T++ELA K+T++AT+ +GR +   E A QKL +L  YR++Y  + Q     G+ A
Sbjct: 7   PFRLETVLELAKKDTEKATQEVGRLMNTRELAAQKLAMLSDYRNNYRQQMQVNAEGGIDA 66

Query: 64  LSYRNFQLFIEKIDNAIAGQEDVVRSSQQRVAEARAAWQACERKRMSYDTLATRARDKEM 123
               N+  FI+++ +A+  Q   + + + ++  +R  W   +R+  S+D L  R  +++ 
Sbjct: 67  ARLHNYAAFIDRLGSAVDHQRGTISALEAQLQRSRDNWLEKQRREQSFDILRQRHVEEQR 126

Query: 124 QKQNKRDQKSMDEHASRI 141
           Q Q +R Q+  DEHA+++
Sbjct: 127 QDQERRAQRENDEHAAKL 144


>STM1973 [NUO] COG2882 Flagellar biosynthesis chaperone Sty Salmonella
           typhimurium LT2
          Length = 147

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 79/145 (54%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAVRVSEEAQQKLGILQQYRDDYAARFQETLSNG 60
           MA   AL+TL +LA KE D+A + LG   R  ++A+++L +L  Y+++Y +     + NG
Sbjct: 1   MAQHGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNG 60

Query: 61  LTALSYRNFQLFIEKIDNAIAGQEDVVRSSQQRVAEARAAWQACERKRMSYDTLATRARD 120
           + +  + N+Q FI+ ++ AI      +    Q+V  A  +W+  +++  ++ TL  R   
Sbjct: 61  IASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTA 120

Query: 121 KEMQKQNKRDQKSMDEHASRITFYK 145
             +  +N+ DQK MDE A R    K
Sbjct: 121 AALLAENRMDQKKMDEFAQRAAMRK 145


>ZfliJ [NUO] COG2882 Flagellar biosynthesis chaperone EcZ Escherichia coli
           O157:H7 EDL933
          Length = 147

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 78/145 (53%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAVRVSEEAQQKLGILQQYRDDYAARFQETLSNG 60
           MA   AL TL +LA KE ++A + LG   R  ++A+++L +L  Y+++Y       +S G
Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

Query: 61  LTALSYRNFQLFIEKIDNAIAGQEDVVRSSQQRVAEARAAWQACERKRMSYDTLATRARD 120
           +T+  + N+Q FI+ ++ AI      +    Q+V  A  +W+  +++  ++ TL  R   
Sbjct: 61  MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

Query: 121 KEMQKQNKRDQKSMDEHASRITFYK 145
             +  +N+ DQK MDE A R    K
Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRK 145


>ECs2681 [NUO] COG2882 Flagellar biosynthesis chaperone Ecs Escherichia coli
           O157:H7
          Length = 147

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 78/145 (53%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAVRVSEEAQQKLGILQQYRDDYAARFQETLSNG 60
           MA   AL TL +LA KE ++A + LG   R  ++A+++L +L  Y+++Y       +S G
Sbjct: 1   MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRNNLNSDMSAG 60

Query: 61  LTALSYRNFQLFIEKIDNAIAGQEDVVRSSQQRVAEARAAWQACERKRMSYDTLATRARD 120
           +T+  + N+Q FI+ ++ AI      +    Q+V  A  +W+  +++  ++ TL  R   
Sbjct: 61  MTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQST 120

Query: 121 KEMQKQNKRDQKSMDEHASRITFYK 145
             +  +N+ DQK MDE A R    K
Sbjct: 121 AALLAENRLDQKKMDEFAQRAAMRK 145