BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0338.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0379 [N] COG1580 Flagellar basal body-associated protein Rso ...   101   7e-22
fliL [N] COG1580 Flagellar basal body-associated protein Eco Esc...    88   8e-18
ZfliL [N] COG1580 Flagellar basal body-associated protein EcZ Es...    88   8e-18
ECs2683 [N] COG1580 Flagellar basal body-associated protein Ecs ...    88   8e-18
STM1975 [N] COG1580 Flagellar basal body-associated protein Sty ...    73   4e-13

>RSp0379 [N] COG1580 Flagellar basal body-associated protein Rso Ralstonia
           solanacearum
          Length = 164

 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 3/133 (2%)

Query: 38  IGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEPFVVNLQQESG-DQYLQVAMTLQV 96
           +GGAAA+F +GG             + K P FV +E   VNLQ E G D+YLQ+A+T + 
Sbjct: 34  MGGAAAWFFLGGGSHA--AGPAAPPKPKEPVFVPMETLTVNLQPEEGNDRYLQIAITFKS 91

Query: 97  PDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGKRRLTDEIIDQLGEPFSGKGKGP 156
            +    E +K Y P++RSR+LM+LSSK  +EL ++EGK +L  EI++Q  + +   GK  
Sbjct: 92  YNKHAEEEIKSYTPELRSRVLMLLSSKAPAELYSNEGKAKLAKEIVEQCEQAYKAVGKES 151

Query: 157 QITDVFYTSFVIQ 169
            + DV +T+FVIQ
Sbjct: 152 PVVDVLFTNFVIQ 164


>fliL [N] COG1580 Flagellar basal body-associated protein Eco Escherichia
           coli K12
          Length = 154

 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 15  DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74
           D A +K SK+ L+I +   + L    +A +          +D A+++    +P F  ++ 
Sbjct: 3   DYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRV-VPSPVFYALDT 61

Query: 75  FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134
           F VNL     D+ L + +TL++ D  T   L  Y+P+VRSRLL++ S + A+ L T EGK
Sbjct: 62  FTVNLGD--ADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGK 119

Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169
           + L  EI   L  P         +TDV YT+F+++
Sbjct: 120 KNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR 154


>ZfliL [N] COG1580 Flagellar basal body-associated protein EcZ Escherichia
           coli O157:H7 EDL933
          Length = 154

 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 15  DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74
           D A +K SK+ L+I +   + L    +A +          +D A+++    +P F  ++ 
Sbjct: 3   DYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRV-VPSPVFYALDT 61

Query: 75  FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134
           F VNL     D+ L + +TL++ D  T   L  Y+P+VRSRLL++ S + A+ L T EGK
Sbjct: 62  FTVNLGD--ADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGK 119

Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169
           + L  EI   L  P         +TDV YT+F+++
Sbjct: 120 KNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR 154


>ECs2683 [N] COG1580 Flagellar basal body-associated protein Ecs Escherichia
           coli O157:H7
          Length = 154

 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 15  DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74
           D A +K SK+ L+I +   + L    +A +          +D A+++    +P F  ++ 
Sbjct: 3   DYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADDKAQQRV-VPSPVFYALDT 61

Query: 75  FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134
           F VNL     D+ L + +TL++ D  T   L  Y+P+VRSRLL++ S + A+ L T EGK
Sbjct: 62  FTVNLGD--ADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLLLLFSRQDAAVLATEEGK 119

Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169
           + L  EI   L  P         +TDV YT+F+++
Sbjct: 120 KNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR 154


>STM1975 [N] COG1580 Flagellar basal body-associated protein Sty Salmonella
           typhimurium LT2
          Length = 155

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 15  DAAPAKSSKKMLFIIVGAVLVLVIGGAAAFFMMGGKGKKGEDHAEEKAEAKAPTFVVIEP 74
           D+A  K SK+ ++I +  ++ L     A +     + +   +   E A   AP F  ++ 
Sbjct: 3   DSAINKKSKRSIWIPLLVLITLAACATAGYSYWRMQQQPTTNAKAEPAPPPAPVFFALDT 62

Query: 75  FVVNLQQESGDQYLQVAMTLQVPDGQTAEALKLYMPQVRSRLLMVLSSKKASELLTSEGK 134
           F VNL     D+ L + +TL++ D  T   L  Y+P+VRSRLL++ S + A+EL T  GK
Sbjct: 63  FTVNLG--DADRVLYIGVTLRLKDEATRARLNEYLPEVRSRLLLLFSRQNAAELSTEAGK 120

Query: 135 RRLTDEIIDQLGEPFSGKGKGPQITDVFYTSFVIQ 169
           ++L   I + L  P         +TDV YT+F+++
Sbjct: 121 QKLIAAIKETLAAPLVAGQPKQVVTDVLYTAFILR 155