BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0335.p         (151 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0377 [NU] COG1886 Flagellar motor switch/type III secretory p...   161   5e-40
fliN [NU] COG1886 Flagellar motor switch/type III secretory path...   151   5e-37
ZfliN [NU] COG1886 Flagellar motor switch/type III secretory pat...   149   3e-36
ECs2685 [NU] COG1886 Flagellar motor switch/type III secretory p...   149   3e-36
STM1977 [NU] COG1886 Flagellar motor switch/type III secretory p...   144   5e-35

>RSp0377 [NU] COG1886 Flagellar motor switch/type III secretory pathway
           protein Rso Ralstonia solanacearum
          Length = 156

 Score =  161 bits (407), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/106 (78%), Positives = 91/106 (85%), Gaps = 2/106 (1%)

Query: 48  MATVFKDLSADDIKTNTP--NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG 105
           +++VFK L   +  T     NDID ILDIPVQLTVELGRTK+ IKNLLQLAQGSVVELD 
Sbjct: 51  LSSVFKPLMPGEKTTAAAPRNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDA 110

Query: 106 MAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151
           +AGEPMDVLVNG LIAQGEVVVVN+KFGIRLTDIITP+ERIRKLNR
Sbjct: 111 LAGEPMDVLVNGYLIAQGEVVVVNEKFGIRLTDIITPSERIRKLNR 156


>fliN [NU] COG1886 Flagellar motor switch/type III secretory pathway
           protein Eco Escherichia coli K12
          Length = 137

 Score =  151 bits (382), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 103/150 (68%), Gaps = 20/150 (13%)

Query: 2   ADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIK 61
           AD+N      A DD W  A++EQ               K  S+  A  TVF+     D+ 
Sbjct: 8   ADDN----NGAMDDLWAEALSEQ---------------KSTSSKSAAETVFQQFGGGDV- 47

Query: 62  TNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIA 121
           + T  DID I+DIPV+LTVELGRT++ IK LL+L QGSVV LDG+AGEP+D+L+NG LIA
Sbjct: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107

Query: 122 QGEVVVVNDKFGIRLTDIITPAERIRKLNR 151
           QGEVVVV DK+G+R+TDIITP+ER+R+L+R
Sbjct: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137


>ZfliN [NU] COG1886 Flagellar motor switch/type III secretory pathway
           protein EcZ Escherichia coli O157:H7 EDL933
          Length = 137

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 102/150 (68%), Gaps = 20/150 (13%)

Query: 2   ADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIK 61
           AD+N      A DD W  A++EQ               K  S+  A   VF+     D+ 
Sbjct: 8   ADDN----NGAMDDLWAEALSEQ---------------KSTSSKSAADAVFQQFGGGDV- 47

Query: 62  TNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIA 121
           + T  DID I+DIPV+LTVELGRT++ IK LL+L QGSVV LDG+AGEP+D+L+NG LIA
Sbjct: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107

Query: 122 QGEVVVVNDKFGIRLTDIITPAERIRKLNR 151
           QGEVVVV DK+G+R+TDIITP+ER+R+L+R
Sbjct: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137


>ECs2685 [NU] COG1886 Flagellar motor switch/type III secretory pathway
           protein Ecs Escherichia coli O157:H7
          Length = 137

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 102/150 (68%), Gaps = 20/150 (13%)

Query: 2   ADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIK 61
           AD+N      A DD W  A++EQ               K  S+  A   VF+     D+ 
Sbjct: 8   ADDN----NGAMDDLWAEALSEQ---------------KSTSSKSAADAVFQQFGGGDV- 47

Query: 62  TNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIA 121
           + T  DID I+DIPV+LTVELGRT++ IK LL+L QGSVV LDG+AGEP+D+L+NG LIA
Sbjct: 48  SGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107

Query: 122 QGEVVVVNDKFGIRLTDIITPAERIRKLNR 151
           QGEVVVV DK+G+R+TDIITP+ER+R+L+R
Sbjct: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137


>STM1977 [NU] COG1886 Flagellar motor switch/type III secretory pathway
           protein Sty Salmonella typhimurium LT2
          Length = 137

 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 100/150 (66%), Gaps = 20/150 (13%)

Query: 2   ADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIK 61
           +DEN      A DD W  A+ EQ               K  +   A   VF+ L   D+ 
Sbjct: 8   SDENTG----ALDDLWADALNEQ---------------KATTTKSAADAVFQQLGGGDV- 47

Query: 62  TNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIA 121
           +    DID I+DIPV+LTVELGRT++ IK LL+L QGSVV LDG+AGEP+D+L+NG LIA
Sbjct: 48  SGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIA 107

Query: 122 QGEVVVVNDKFGIRLTDIITPAERIRKLNR 151
           QGEVVVV DK+G+R+TDIITP+ER+R+L+R
Sbjct: 108 QGEVVVVADKYGVRITDIITPSERMRRLSR 137