BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0322.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0348 [N] COG2063 Flagellar basal body L-ring protein Rso Rals... 184 1e-46 flgH [N] COG2063 Flagellar basal body L-ring protein Eco Escheri... 162 5e-40 ZflgH [N] COG2063 Flagellar basal body L-ring protein EcZ Escher... 162 5e-40 ECs1457 [N] COG2063 Flagellar basal body L-ring protein Ecs Esch... 162 5e-40 YPO1805 [N] COG2063 Flagellar basal body L-ring protein Ype Yers... 158 1e-38 >RSp0348 [N] COG2063 Flagellar basal body L-ring protein Rso Ralstonia solanacearum Length = 244 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 105/218 (48%), Positives = 137/218 (62%), Gaps = 9/218 (4%) Query: 11 AGILAVA-GCTTVPDSIVEGPKSARPQPASYAPPTSGAIFQGAV-----YRPLLEDRRAR 64 A +LA A G P+ IV+GP +ARP AP +GAI+Q +R + EDRRA Sbjct: 27 ASLLAAACGMLPPPEPIVQGPTTARPPMPVMAPRQNGAIYQEVASGSGGFRGMFEDRRAH 86 Query: 65 LVGDTLTIVINERTSAGKSAASSASKTGAVNSPAPTFFGTS---IKELSASGSSSAKFDD 121 +VGDT+TIVI E T+A K + S ++G+ + PTF G + + L S S + KFD Sbjct: 87 MVGDTITIVITENTAASKQTSGSVDRSGSKTTSVPTFAGMNPGVLSLLGVSASDANKFDS 146 Query: 122 KGATTSSNTFTGTIGVTVIEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGNT 181 KGA ++N FT TI VTV+EVL NGNLVV+GEKQ+A+ +G E ++FSG V+P + NT Sbjct: 147 KGANGATNNFTATITVTVVEVLSNGNLVVSGEKQMAVGQGTESIKFSGVVNPTTVNNQNT 206 Query: 182 VSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219 V ST VADA++EYR V A M L RFF SVSPF Sbjct: 207 VLSTQVADARMEYRGTGYVAEAQQMGWLSRFFLSVSPF 244 >flgH [N] COG2063 Flagellar basal body L-ring protein Eco Escherichia coli K12 Length = 232 Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 141/220 (64%), Gaps = 16/220 (7%) Query: 13 ILAVAGCTTVPDS-IVEGPKSARPQPASYAPPTSGAIFQGAV-----YRPLLEDRRARLV 66 +L++ GC +P + +V+G SA+P P P +G+IFQ A Y+PL EDRR R + Sbjct: 16 VLSLTGCAWIPSTPLVQGATSAQPVPGP-TPVANGSIFQSAQPINYGYQPLFEDRRPRNI 74 Query: 67 GDTLTIVINERTSAGKSAASSASKTGAVN---SPAPTF----FGTSIKELSASGSSSAKF 119 GDTLTIV+ E SA KS++++AS+ G N P + FG + ++ ASG ++ F Sbjct: 75 GDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNT--F 132 Query: 120 DDKGATTSSNTFTGTIGVTVIEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTG 179 + KG +SNTF+GT+ VTV +VL NGNL V GEKQ+A+++G E++RFSG V+P I Sbjct: 133 NGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGS 192 Query: 180 NTVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219 NTV ST VADA++EY N ++ A M L RFF ++SP Sbjct: 193 NTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232 >ZflgH [N] COG2063 Flagellar basal body L-ring protein EcZ Escherichia coli O157:H7 EDL933 Length = 232 Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 141/220 (64%), Gaps = 16/220 (7%) Query: 13 ILAVAGCTTVPDS-IVEGPKSARPQPASYAPPTSGAIFQGAV-----YRPLLEDRRARLV 66 +L++ GC +P + +V+G SA+P P P +G+IFQ A Y+PL EDRR R + Sbjct: 16 VLSLTGCAWIPSTPLVQGATSAQPVPGP-TPVANGSIFQSAQPINYGYQPLFEDRRPRNI 74 Query: 67 GDTLTIVINERTSAGKSAASSASKTGAVN---SPAPTF----FGTSIKELSASGSSSAKF 119 GDTLTIV+ E SA KS++++AS+ G N P + FG + ++ ASG ++ F Sbjct: 75 GDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNT--F 132 Query: 120 DDKGATTSSNTFTGTIGVTVIEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTG 179 + KG +SNTF+GT+ VTV +VL NGNL V GEKQ+A+++G E++RFSG V+P I Sbjct: 133 NGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGS 192 Query: 180 NTVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219 NTV ST VADA++EY N ++ A M L RFF ++SP Sbjct: 193 NTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232 >ECs1457 [N] COG2063 Flagellar basal body L-ring protein Ecs Escherichia coli O157:H7 Length = 232 Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 141/220 (64%), Gaps = 16/220 (7%) Query: 13 ILAVAGCTTVPDS-IVEGPKSARPQPASYAPPTSGAIFQGAV-----YRPLLEDRRARLV 66 +L++ GC +P + +V+G SA+P P P +G+IFQ A Y+PL EDRR R + Sbjct: 16 VLSLTGCAWIPSTPLVQGATSAQPVPGP-TPVANGSIFQSAQPINYGYQPLFEDRRPRNI 74 Query: 67 GDTLTIVINERTSAGKSAASSASKTGAVN---SPAPTF----FGTSIKELSASGSSSAKF 119 GDTLTIV+ E SA KS++++AS+ G N P + FG + ++ ASG ++ F Sbjct: 75 GDTLTIVLQENVSASKSSSANASRDGKTNFGFDTVPRYLQGLFGNARADVEASGGNT--F 132 Query: 120 DDKGATTSSNTFTGTIGVTVIEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTG 179 + KG +SNTF+GT+ VTV +VL NGNL V GEKQ+A+++G E++RFSG V+P I Sbjct: 133 NGKGGANASNTFSGTLTVTVDQVLVNGNLHVVGEKQIAINQGTEFIRFSGVVNPRTISGS 192 Query: 180 NTVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219 NTV ST VADA++EY N ++ A M L RFF ++SP Sbjct: 193 NTVPSTQVADARIEYVGNGYINEAQNMGWLQRFFLNLSPM 232 >YPO1805 [N] COG2063 Flagellar basal body L-ring protein Ype Yersinia pestis Length = 229 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 141/223 (63%), Gaps = 16/223 (7%) Query: 10 LAGILAVAGCTTVPDS-IVEGPKSARPQPASYAPPTSGAIFQGAV-----YRPLLEDRRA 63 L +L + GC +P +V+G SA+P PAS AP +G+IFQ Y+PL EDRR Sbjct: 10 LMTMLLLNGCAYIPHKPLVDGTTSAQPAPAS-APLPNGSIFQTVQPMNYGYQPLFEDRRP 68 Query: 64 RLVGDTLTIVINERTSAGKSAASSASKTGAVN---SPAPTFF----GTSIKELSASGSSS 116 R +GDTLTI + E SA KS++++AS+ G + + AP + G ++ +G ++ Sbjct: 69 RNIGDTLTITLQENVSASKSSSANASRNGTSSFGVTTAPRYLDGLLGNGRADMEITGDNT 128 Query: 117 AKFDDKGATTSSNTFTGTIGVTVIEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNI 176 F KG ++NTF+GTI VTV +VL NGNL V GEKQ+A+++G E++RFSG V+P I Sbjct: 129 --FGGKGGANANNTFSGTITVTVDQVLANGNLHVVGEKQIAINQGTEFIRFSGVVNPRTI 186 Query: 177 QTGNTVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219 N+V+ST VADA++EY N ++ A M L RFF +VSP+ Sbjct: 187 SGSNSVTSTQVADARIEYVGNGYINEAQTMGWLQRFFLNVSPY 229