BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0321.p         (260 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1179 [N] COG4786 Flagellar basal body rod protein Sty Salmone...   399   e-111
flgG [N] COG4786 Flagellar basal body rod protein Eco Escherichi...   397   e-110
ZflgG [N] COG4786 Flagellar basal body rod protein EcZ Escherich...   397   e-110
ECs1456 [N] COG4786 Flagellar basal body rod protein Ecs Escheri...   397   e-110
RSp0347 [N] COG4786 Flagellar basal body rod protein Rso Ralston...   389   e-108

>STM1179 [N] COG4786 Flagellar basal body rod protein Sty Salmonella
           typhimurium LT2
          Length = 260

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/260 (72%), Positives = 223/260 (85%)

Query: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60
           MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120
            LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDGT+AYTRDG+F
Sbjct: 61  TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGTSAYTRDGSF 120

Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180
           Q D  GQLVT+ G+ +QP IT+P N   +T+GRDGVVS+ Q G  A  Q+G + + TF+N
Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180

Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240
             GLES GENLY+ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY
Sbjct: 181 DTGLESIGENLYIETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240

Query: 241 EINSKAITTSDQMLAKLSQL 260
           EINSKA++T+DQML KL+QL
Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260


>flgG [N] COG4786 Flagellar basal body rod protein Eco Escherichia coli
           K12
          Length = 260

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/260 (72%), Positives = 222/260 (85%)

Query: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60
           MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120
            LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDG++AYTRDG+F
Sbjct: 61  TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120

Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180
           Q D  GQLVT+ G+ +QP IT+P N   +T+GRDGVVS+ Q G  A  Q+G + + TF+N
Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180

Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240
             GLES GENLY ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY
Sbjct: 181 DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240

Query: 241 EINSKAITTSDQMLAKLSQL 260
           EINSKA++T+DQML KL+QL
Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260


>ZflgG [N] COG4786 Flagellar basal body rod protein EcZ Escherichia coli
           O157:H7 EDL933
          Length = 260

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/260 (72%), Positives = 222/260 (85%)

Query: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60
           MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120
            LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDG++AYTRDG+F
Sbjct: 61  TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120

Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180
           Q D  GQLVT+ G+ +QP IT+P N   +T+GRDGVVS+ Q G  A  Q+G + + TF+N
Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180

Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240
             GLES GENLY ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY
Sbjct: 181 DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240

Query: 241 EINSKAITTSDQMLAKLSQL 260
           EINSKA++T+DQML KL+QL
Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260


>ECs1456 [N] COG4786 Flagellar basal body rod protein Ecs Escherichia coli
           O157:H7
          Length = 260

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/260 (72%), Positives = 222/260 (85%)

Query: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60
           MI SLWI+KTGLDAQQT +DVI+NNLANVSTNGFKR RAVFEDLLYQT+RQPGAQSS+QT
Sbjct: 1   MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDLLYQTIRQPGAQSSEQT 60

Query: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120
            LPSGLQIGTGVRPVATER+ +QGN++QTNN KD+AI+G GFFQ++LPDG++AYTRDG+F
Sbjct: 61  TLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGFFQVMLPDGSSAYTRDGSF 120

Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180
           Q D  GQLVT+ G+ +QP IT+P N   +T+GRDGVVS+ Q G  A  Q+G + + TF+N
Sbjct: 121 QVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVTQQGQAAPVQVGQLNLTTFMN 180

Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240
             GLES GENLY ET +SGAPN + PG NGAG L+QGYVETSNVNV EELVNMIQ QRAY
Sbjct: 181 DTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGYVETSNVNVAEELVNMIQVQRAY 240

Query: 241 EINSKAITTSDQMLAKLSQL 260
           EINSKA++T+DQML KL+QL
Sbjct: 241 EINSKAVSTTDQMLQKLTQL 260


>RSp0347 [N] COG4786 Flagellar basal body rod protein Rso Ralstonia
           solanacearum
          Length = 260

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/260 (73%), Positives = 217/260 (83%)

Query: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60
           MIRSLWISKTG+DAQQ+QLDVISNNLANV+T GFKRSRAVFEDLLYQ VR+PGAQSSQQT
Sbjct: 1   MIRSLWISKTGMDAQQSQLDVISNNLANVNTTGFKRSRAVFEDLLYQNVREPGAQSSQQT 60

Query: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120
            LPSG+QIGTG R VATER+ TQGN+ QT N  D+AI GNGFFQ+ +PDGT AYTRDG+F
Sbjct: 61  TLPSGMQIGTGTRIVATERLHTQGNLQQTGNSTDVAINGNGFFQVQMPDGTLAYTRDGSF 120

Query: 121 QTDSQGQLVTSSGYTLQPPITVPLNTTKLTVGRDGVVSIMQAGSTATTQIGTIQVATFIN 180
           Q ++QGQLVTSSGY +QP ITVP N T LTV +DG V++   G+  +TQ+GT Q+A FIN
Sbjct: 121 QINAQGQLVTSSGYPVQPAITVPQNATSLTVAKDGTVTVTTPGAVNSTQVGTFQLANFIN 180

Query: 181 PAGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNMIQTQRAY 240
           PAGL S GENLY ET ASG  N   PG+NG G L Q YVETSNVNVVEE+VNMIQTQRAY
Sbjct: 181 PAGLRSMGENLYAETEASGTANLAAPGSNGIGVLNQNYVETSNVNVVEEMVNMIQTQRAY 240

Query: 241 EINSKAITTSDQMLAKLSQL 260
           EINSKA+ TSDQML KL+QL
Sbjct: 241 EINSKAVQTSDQMLEKLAQL 260