BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0318.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia ... 171 1e-42 ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia... 161 1e-39 ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherich... 160 2e-39 flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia ... 160 2e-39 STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonell... 152 8e-37 >YPO1801 [N] COG1843 Flagellar hook capping protein Ype Yersinia pestis Length = 225 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 131/206 (63%), Gaps = 8/206 (3%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +QNRFLTLL+AQ+KNQDP NPM+N++LT+Q+AQ++TVSGI +LN+TL + G ++SSQ+L Sbjct: 28 LQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSL 87 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 + ++IG V+ PG ++ T T D T G+ L A V TI DS G Sbjct: 88 YATSLIGRGVMVPGTNI-FTGST-------DGTVSTTPFGLELQRPADKVTATISDSNGQ 139 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+++G +GV WDG+ DAG A DG YT + ASN G ++ AT L + V V Sbjct: 140 VVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGV 199 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 + ADG KL++ GTI +V QIL Sbjct: 200 TRGADGSKLDLGLAGTITLDEVRQIL 225 >ZflgD [N] COG1843 Flagellar hook capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 231 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +Q+ FLTLL+AQ+KNQDP NPM+N++LTSQ+AQ+STVSGI +LN+TL ++ G +++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 ++N+IGH V+ PG +V L +++ + T GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV-LAGTGSEEGAVTTTTP----FGVELQQAADKVTATITDKNGA 145 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+D+G +GV WDGT GS A +G+Y ++ASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 +G L++ GT +V QI+ Sbjct: 206 IRGNNGBTLDLGTYGTTTLDEVRQII 231 >ECs1453 [N] COG1843 Flagellar hook capping protein Ecs Escherichia coli O157:H7 Length = 231 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +Q+ FLTLL+AQ+KNQDP NPM+N++LTSQ+AQ+STVSGI +LN+TL ++ G +++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 ++N+IGH V+ PG +V L +++ + T GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV-LAGTGSEEGAVTTTTP----FGVELQQAADKVTATITDKNGA 145 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+D+G +GV WDGT GS A +G+Y ++ASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 +G L++ GT +V QI+ Sbjct: 206 IRGNNGNTLDLGTYGTTTLDEVRQII 231 >flgD [N] COG1843 Flagellar hook capping protein Eco Escherichia coli K12 Length = 231 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 129/206 (62%), Gaps = 5/206 (2%) Query: 35 IQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQAL 94 +Q+ FLTLL+AQ+KNQDP NPM+N++LTSQ+AQ+STVSGI +LN+TL ++ G +++SQ+L Sbjct: 31 LQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSL 90 Query: 95 SSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLATNASSVVVTIKDSTGA 154 ++N+IGH V+ PG +V L +++ + T GV L A V TI D GA Sbjct: 91 QASNLIGHGVMIPGTTV-LAGTGSEEGAVTTTTP----FGVELQQAADKVTATITDKNGA 145 Query: 155 VVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNGTAVNATALAFGTVASV 214 VVRT+D+G +GV WDGT GS A +G+Y ++ASN GT + A L F V V Sbjct: 146 VVRTIDIGELTAGVHSFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGV 205 Query: 215 STAADGIKLNVSNIGTIKPTDVVQIL 240 G L++ GT +V QI+ Sbjct: 206 IRGNSGNTLDLGTYGTTTLDEVRQII 231 >STM1176 [N] COG1843 Flagellar hook capping protein Sty Salmonella typhimurium LT2 Length = 232 Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 19 SSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLN 78 +T+ S +T ++ +Q+ FLTLL+AQ+KNQDP NP+ N++LT+Q+AQ+STVSGI +LN Sbjct: 16 KTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLN 75 Query: 79 STLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTKDASGNDVTKQHAVMGVNLA 138 +TL + G +++SQ+L + +IGH V+ PG ++ L + ++ + T GV L Sbjct: 76 TTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI-LAGKGAEEGAVTSTTP----FGVELQ 130 Query: 139 TNASSVVVTIKDSTGAVVRTMDLGTQASGVVPVIWDGTNDAGSKAADGNYTFTVAASNNG 198 A V TI D G VVRT+++G +GV WDG G+ +G+Y + ASN G Sbjct: 131 QPADKVTATITDKDGRVVRTLEIGELRAGVHTFTWDGKQTDGTTVPNGSYNIAITASNGG 190 Query: 199 TAVNATALAFGTVASVSTAADGIKLNVSNIGTIKPTDVVQIL 240 T + A L F V V+ ++G L++ GT +V QI+ Sbjct: 191 TQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII 232